New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5612120	44 (0.850)	6 (0.120)	5/246	NT	12.2%	coding (1114/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	= 5612156	45 (0.920)					coding (1150/1176 nt)	PP_4931	hypothetical protein

CAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGAAGTACCCCACGGGC  >  NC_002947/5612012‑5612301                                                                                                                                                 |                                                                                                                                                  cagcGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggc                                                                                                                                               <  2:135405‑M2/149‑5 (MQ=255)        tgctgcTGGGCTGCCCGACCAAACTCGCACTGGCACCCGACATCAGCCACCGGGTAATCAGCCACCTGGAGCGCGACCGCATTCGTCCACAAGCACACGCCGACCTGACCGACCTGCCACGCCCACCGCTGGGCGTACCGGCCTCGGAg                                                                                                                                        >  1:96590/1‑149 (MQ=255)                ggCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                                                                <  4:218141/149‑1 (MQ=255)                   tGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACtgctgc                                                                                                                              >  8:45198/1‑148 (MQ=255)                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACGTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGGCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCAt                                                                                                                           <  8:12139/149‑1 (MQ=255)                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGcc                                                                                                                             <  5:279414/147‑1 (MQ=255)                     gCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCAt                                                                                                                           >  5:271423/1‑149 (MQ=255)                       cGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                                                                >  8:228934/1‑142 (MQ=255)                       cGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAActgct                                                                                                                                <  7:228934/142‑1 (MQ=255)                             aaCTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGc                                                                                                                   >  4:119695/1‑149 (MQ=255)                                  gcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCaa                                                                                                                <  7:45198/147‑1 (MQ=255)                                  gcactggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACAGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAAcc                                                                                                              >  5:218168/1‑149 (MQ=255)                                      tggcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGCCGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTg                                                                                                           >  6:158040/1‑148 (MQ=255)                                        gcacCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCAc                                                                                                        <  1:124777/149‑1 (MQ=255)                                                 ttCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCAt                                                                                               >  4:61732/1‑149 (MQ=255)                                                    aGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCg                                                                                             <  1:135405/148‑1 (MQ=255)                                                           gggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTgg                                                                                     <  6:218168/149‑1 (MQ=255)                                                            ggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGa                                                                                                                                         >  3:214870/1‑96 (MQ=255)                                                            ggTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGa                                                                                                                                         <  4:214870/96‑1 (MQ=255)                                                             gTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTggg                                                                                    >  5:90609/1‑148 (MQ=255)                                                             gTAATAAGCCTCCTGCAGCGCGACGTCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGTAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGgc                                                                                   <  8:1263/149‑1 (MQ=255)                                                                    gCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGc                                                                                                          <  1:115705/119‑1 (MQ=255)                                                                    gCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCACTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGc                                                                                                          >  2:115705/1‑119 (MQ=255)                                                                      cACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGc                                                                          <  3:61342/149‑1 (MQ=255)                                                                            gAGCGCGACGGGTTTCGTCCTCTAGCACAGGCGGACCTGACCGACCTGCCACGCCGTCCGGTGGGCGTAGCGGGCTGGTAGCATCTGCTGCCATGTGCCTGGCAACCCTGGACGGTTTCCATCGCCCGGTGGGCAGCACGGGCGTCaa                                                                     <  2:96590/148‑1 (MQ=255)                                                                            gAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCaa                                                                     <  4:112270/148‑1 (MQ=255)                                                                                  gACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAg                                                                    >  6:235242/1‑143 (MQ=255)                                                                                  gACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAg                                                                    <  5:235242/143‑1 (MQ=255)                                                                                     ggCATTCGTCCACAAGCACAGGCCGACCTGACAGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGACTCGCCa                                                           >  7:148787/1‑149 (MQ=255)                                                                                       cATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACt                                                         <  6:271423/149‑1 (MQ=255)                                                                                               cacaAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCg                                                 >  8:154823/1‑149 (MQ=255)                                                                                                acaAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCgg                                                >  6:125897/1‑149 (MQ=255)                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaa                                                                                      <  4:256747‑M2/107‑62 (MQ=255)                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaa                                                                                      >  3:256747‑M2/1‑46 (MQ=255)                                                                                                    gCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACg                                            >  7:29422/1‑149 (MQ=255)                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgccagtttggtcggccagcccaccagcaggc                                          <  1:140557‑M2/149‑106 (MQ=255)                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgcca                                                                     >  4:259278‑M2/1‑44 (MQ=255)                                                                                                      acaGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgcca                                                                     <  3:259278‑M2/122‑79 (MQ=255)                                                                                                              aCCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTgg                                  <  3:119695/149‑1 (MQ=255)                                                                                                                  gaccgaccTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTg                                                                                      <  8:84237/93‑1 (MQ=255)                                                                                                                  gaccgaccTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTg                                                                                      >  7:84237/1‑93 (MQ=255)                                                                                                                   ccctaccTGCCACGCCCTCCGCTGGTCTTACCGGCCTGGGAGCAACTGCTTCCATGAGCCTTCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTcgc                             <  8:148787/145‑1 (MQ=255)                                                                                                                     cgaccTGCCACGCCCTCCGCTGGGCGTACcggcctgtgcttgtggacgaatgccgtcgcgctccaggtggctgattacccggtcgctgaagtccggtgccagtgccagtttggtcggccagcccaccagcaggcgctgctggtcggcaa                           >  2:140557‑M2/1‑29 (MQ=255)                                                                                                                         cTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAg                       <  8:29422/149‑1 (MQ=255)                                                                                                                            ccACGCCCTCCGCTGGGCGTACCGGCCTGGTAGCAAAGGCTGCCATGTGCCTCCCACCCATGCACGATTTCCATCGCCCGCTGGGAAGCACCGCCCACTACGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAggg                     <  1:242490/148‑1 (MQ=255)                                                                                                                            ccACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAgg                      <  5:125897/147‑1 (MQ=255)                                                                                                                             cACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCg                   >  6:168495/1‑149 (MQ=255)                                                                                                                              aCGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGt                  >  3:122343/1‑149 (MQ=255)                                                                                                                               cGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTg                 <  3:61732/149‑1 (MQ=255)                                                                                                                                 cccTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTg                 >  5:61292/1‑147 (MQ=255)                                                                                                                                 cccTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGaa               <  6:90609/149‑1 (MQ=255)                                                                                                                                 cccTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGaa               <  5:158040/149‑1 (MQ=255)                                                                                                                                    tCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACgg                                           >  7:117361/1‑118 (MQ=255)                                                                                                                                      cGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGAAGTa            <  6:61292/147‑1 (MQ=255)                                                                                                                                          gggCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGAAGTACCCCAc      >  7:260320/1‑149 (MQ=255)                                                                                                                                              gTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGAAGTACCCCACGGGc  >  5:145035/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CAGCGCCTGCTGGTGGGCTGGCCGACCAAACTGGCACTGGCACCGGACTTCAGCGACCGGGTAATCAGCCACCTGGAGCGCGACGGCATTCGTCCACAAGCACAGGCCGACCTGACCGACCTGCCACGCCCTCCGCTGGGCGTACCGGCCTGGGAGCAACTGCTGCCATGAGCCTGCCAACCCTGCACGCATTCCATCGCCCGCTGGGCAGCACCGGCCTCAAGGTCTCGCCACTGGGCCTCGGCACGGTCAAGCTGGGTCGCGATCAGGGCGTGAAGTACCCCACGGGC  >  NC_002947/5612012‑5612301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.