New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5770663	37 (0.720)	4 (0.080)	4/244	NT	9.3%	coding (209/4716 nt)	PP_5060	hypothetical protein
	?	NC_002947	= 5770682	43 (0.890)					coding (190/4716 nt)	PP_5060	hypothetical protein

GACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTG  >  NC_002947/5770519‑5770811                                                                                                                                                 |                                                                                                                                                     gactcgaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAggg                                                                                                                                                   <  5:195403/148‑1 (MQ=255)      gaTGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACAt                                                                                                                                               >  5:261252/1‑147 (MQ=255)           cGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTAc                                                                                                                                        >  7:85350/1‑149 (MQ=255)               aaaGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCg                                                                                                                                    <  6:261252/149‑1 (MQ=255)                 aGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGt                                                                                                                                  >  2:90714‑M2/1‑148 (MQ=255)                          gCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCGGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAg                                                                                                                         <  5:14582/149‑1 (MQ=255)                               ttCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACGTCAGGTACAGCGGTGCAGCCGAGGTCAt                                                                                                                    <  7:268990/149‑1 (MQ=255)                                    gatAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCAAAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAg                                                                                                               >  7:278649/3‑149 (MQ=255)                                      tAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAccgctgtacctgatgtccctgcagccggatggtagatcg                                                                                                               >  3:24359‑M1/1‑108 (MQ=255)                                      tAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAccgctgtacctgatgtccctgcagccggatgg                                                                                                                      <  4:24359‑M1/140‑33 (MQ=255)                                                    cgcgccgGGGGGAGGTCCAGTGGTTTAGGCGCAAGCAGGGCCTGCAGCACAACATCCACGAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                               <  8:278649/147‑1 (MQ=255)                                                      cgccgGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                               <  2:291612/147‑1 (MQ=255)                                                      cgccgGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                               >  1:291612/1‑147 (MQ=255)                                                           gggCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGa                                                                                        >  8:154173/1‑149 (MQ=255)                                                             gCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATa                                                                                      <  1:31322/149‑1 (MQ=255)                                                              cGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAg                                                                                     >  5:128653/1‑149 (MQ=255)                                                                     cAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                              <  6:128653/149‑1 (MQ=255)                                                                      aGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAg                                                                             >  4:153464/1‑149 (MQ=255)                                                                        tGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGAt                                                                                                         >  2:52418/1‑119 (MQ=255)                                                                        tGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGAt                                                                                                         <  1:52418/119‑1 (MQ=255)                                                                          gTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAccgctgtacctgatgtccctgcagccgga                                                                                                                         <  3:99433‑M1/101‑30 (MQ=255)                                                                          gTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAccgctgtacctgatgtccctgcagccgga                                                                                                                         >  4:99433‑M1/1‑72 (MQ=255)                                                                            ttAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCAc                                                                       >  1:286456/1‑149 (MQ=255)                                                                                ccGAAAGCAGGGAATGCAGCACAACATCCACAAGCGGCTGAGGGCGCCAGACACCATCCGACGGCAGTGACATCAGGTACAGCGGTGCAGCCGAGGTCTTTTCAGGGCGATCCACGCCAACCAGAGGATAGTGCTCCAGGATCACCtt                                                                    >  4:206727/1‑148 (MQ=255)                                                                                  gCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCATGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCAt                                                                 <  7:154173/149‑1 (MQ=255)                                                                                       cAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAgg                                                                            >  3:193145/1‑133 (MQ=255)                                                                                       cAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAgg                                                                            <  4:193145/133‑1 (MQ=255)                                                                                          ggCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGACAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGtt                                                         >  7:18576/1‑149 (MQ=255)                                                                                              tGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGcc                                                     >  5:223894/1‑149 (MQ=255)                                                                                              tGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGcc                                                     >  1:243553/1‑149 (MQ=255)                                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                  >  1:146587/1‑149 (MQ=255)                                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                  >  6:243484/1‑149 (MQ=255)                                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                  <  2:38976/149‑1 (MQ=255)                                                                                                       acaTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACgccag                                             >  3:217850/1‑144 (MQ=255)                                                                                                       acaTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGa                                                <  4:217850/145‑1 (MQ=255)                                                                                                        caTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                              >  8:267052/1‑114 (MQ=255)                                                                                                        caTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                              <  7:267052/114‑1 (MQ=255)                                                                                                         aTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGAc                                          >  5:48297/1‑149 (MQ=255)                                                                                                             accaGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAg                                      >  4:239217/1‑149 (MQ=255)                                                                                                                        aGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACgg                            <  6:223894/148‑1 (MQ=255)                                                                                                                        aGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACgg                            <  2:243553/148‑1 (MQ=255)                                                                                                                           gcgcCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTgg                        <  8:85350/149‑1 (MQ=255)                                                                                                                              cgatctaccatccgGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaaccactggacctcgccccggcgggcgactaccgcctta                       >  3:24359‑M2/7‑39 (MQ=255)                                                                                                                                 gACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACt                  >  8:212472/1‑149 (MQ=255)                                                                                                                                     ccATCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaaccactggacctcgccccggcgggcgactaccgcctta                       <  4:24359‑M2/140‑109 (MQ=255)                                                                                                                                        tCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaac                                                           <  3:99433‑M2/101‑73 (MQ=255)                                                                                                                                        tCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaac                                                           >  4:99433‑M2/1‑29 (MQ=255)                                                                                                                                              tGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGAGATGCACGCCAACCATAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTggg               <  8:204351/139‑1 (MQ=255)                                                                                                                                              tGCAGGGACATCAGGTACAGCGGTGCAGCCAAGGTAATTTCAGGGCGATGAACGCCAACCAAAGGATAGTGATCCAGGATAACATTCATGACATGTTCGCATACGACATGACGGAGCGTGGGACGGATGGCGAAATggg               >  7:204351/1‑139 (MQ=255)                                                                                                                                                 accgctgtacctgatgtccctgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaaccactggacctcgccccggcgggcgactaccgccttagcctgaacccgccccggcgct  >  2:90714‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GACTCGATGGCGAAAAAGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTG  >  NC_002947/5770519‑5770811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.