New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5770663	37 (0.720)	4 (0.080)	4/244	NT	9.3%	coding (209/4716 nt)	PP_5060	hypothetical protein
	?	NC_002947	= 5770682	43 (0.890)					coding (190/4716 nt)	PP_5060	hypothetical protein

AGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTGCGCGTGA  >  NC_002947/5770535‑5770830                                                                                                                                                    |                                                                                                                                                     aGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGt                                                                                                                                                     >  2:90714‑M2/1‑148 (MQ=255)          gCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCGGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAg                                                                                                                                            <  5:14582/149‑1 (MQ=255)               ttCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACGTCAGGTACAGCGGTGCAGCCGAGGTCAt                                                                                                                                       <  7:268990/149‑1 (MQ=255)                    gatAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCAAAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAg                                                                                                                                  >  7:278649/3‑149 (MQ=255)                                    cgcgccgGGGGGAGGTCCAGTGGTTTAGGCGCAAGCAGGGCCTGCAGCACAACATCCACGAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                                                  <  8:278649/147‑1 (MQ=255)                                      cgccgGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                                                  >  1:291612/1‑147 (MQ=255)                                      cgccgGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAAc                                                                                                                  <  2:291612/147‑1 (MQ=255)                                           gggCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGa                                                                                                           >  8:154173/1‑149 (MQ=255)                                             gCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATa                                                                                                         <  1:31322/149‑1 (MQ=255)                                              cGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAg                                                                                                        >  5:128653/1‑149 (MQ=255)                                                     cAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                                                 <  6:128653/149‑1 (MQ=255)                                                      aGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAg                                                                                                >  4:153464/1‑149 (MQ=255)                                                        tGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGAt                                                                                                                            >  2:52418/1‑119 (MQ=255)                                                        tGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGAt                                                                                                                            <  1:52418/119‑1 (MQ=255)                                                            ttAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCAc                                                                                          >  1:286456/1‑149 (MQ=255)                                                                ccGAAAGCAGGGAATGCAGCACAACATCCACAAGCGGCTGAGGGCGCCAGACACCATCCGACGGCAGTGACATCAGGTACAGCGGTGCAGCCGAGGTCTTTTCAGGGCGATCCACGCCAACCAGAGGATAGTGCTCCAGGATCACCtt                                                                                       >  4:206727/1‑148 (MQ=255)                                                                  gCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCATGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCAt                                                                                    <  7:154173/149‑1 (MQ=255)                                                                       cAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAgg                                                                                               >  3:193145/1‑133 (MQ=255)                                                                       cAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAgg                                                                                               <  4:193145/133‑1 (MQ=255)                                                                          ggCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGACAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGtt                                                                            >  7:18576/1‑149 (MQ=255)                                                                              tGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGcc                                                                        >  5:223894/1‑149 (MQ=255)                                                                              tGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGcc                                                                        >  1:243553/1‑149 (MQ=255)                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                                     >  6:243484/1‑149 (MQ=255)                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                                     <  2:38976/149‑1 (MQ=255)                                                                                 agcaCAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTAc                                                                     >  1:146587/1‑149 (MQ=255)                                                                                       acaTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACgccag                                                                >  3:217850/1‑144 (MQ=255)                                                                                       acaTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGa                                                                   <  4:217850/145‑1 (MQ=255)                                                                                        caTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                                                 <  7:267052/114‑1 (MQ=255)                                                                                        caTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCa                                                                                                 >  8:267052/1‑114 (MQ=255)                                                                                         aTCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGAc                                                             >  5:48297/1‑149 (MQ=255)                                                                                             accaGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAg                                                         >  4:239217/1‑149 (MQ=255)                                                                                                        aGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACgg                                               <  2:243553/148‑1 (MQ=255)                                                                                                        aGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACgg                                               <  6:223894/148‑1 (MQ=255)                                                                                                           gcgcCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTgg                                           <  8:85350/149‑1 (MQ=255)                                                                                                              cgatctaccatccgGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaaccactggacctcgccccggcgggcgactaccgcctta                                          >  3:24359‑M2/7‑39 (MQ=255)                                                                                                                 gACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACt                                     >  8:212472/1‑149 (MQ=255)                                                                                                                     ccATCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaaccactggacctcgccccggcgggcgactaccgcctta                                          <  4:24359‑M2/140‑109 (MQ=255)                                                                                                                        tCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaac                                                                              >  4:99433‑M2/1‑29 (MQ=255)                                                                                                                        tCCGGCTGCAGGGACATCAGGTACAGCGGtgcagccggatggtgtctggcgccctcagccgctggtggatgttgtgctgcaggccctgcttgcggctaaac                                                                              <  3:99433‑M2/101‑73 (MQ=255)                                                                                                                              tGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGAGATGCACGCCAACCATAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTggg                                  <  8:204351/139‑1 (MQ=255)                                                                                                                              tGCAGGGACATCAGGTACAGCGGTGCAGCCAAGGTAATTTCAGGGCGATGAACGCCAACCAAAGGATAGTGATCCAGGATAACATTCATGACATGTTCGCATACGACATGACGGAGCGTGGGACGGATGGCGAAATggg                                  >  7:204351/1‑139 (MQ=255)                                                                                                                                  gggACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGa                    <  3:153464/149‑1 (MQ=255)                                                                                                                                      cATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGAtt                  >  4:286112/1‑147 (MQ=255)                                                                                                                                        tCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAgg              <  3:239217/149‑1 (MQ=255)                                                                                                                                         cAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGGCCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGt             >  4:274383/1‑149 (MQ=255)                                                                                                                                         cAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGAc                                                                                 <  3:135296/81‑1 (MQ=255)                                                                                                                                         cAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGAc                                                                                 >  4:135296/1‑81 (MQ=255)                                                                                                                                          aGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGtt            <  3:286112/149‑1 (MQ=255)                                                                                                                                               cAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTgcg       >  6:247502/1‑149 (MQ=255)                                                                                                                                                aGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTgcgc      >  3:207233/1‑149 (MQ=255)                                                                                                                                                aGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTgcgc      >  8:301169/1‑149 (MQ=255)                                                                                                                                                 gCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTGcgcg     >  2:324740/1‑149 (MQ=255)                                                                                                                                                  cGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTGCGCGt    <  2:146587/149‑1 (MQ=255)                                                                                                                                                    gTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTGCGCGTGa  <  5:243484/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AGCGCCGGGGCGGGTTCAGGCTAAGGCGGTAGTCGCCCGCCGGGGCGAGGTCCAGTGGTTTAGCCGCAAGCAGGGCCTGCAGCACAACATCCACCAGCGGCTGAGGGCGCCAGACACCATCCGGCTGCAGGGACATCAGGTACAGCGGTGCAGCCGAGGTCATTTCAGGGCGATGCACGCCAACCAGAGGATAGTGCTCCAGGATCACCTTCATGACCTGTTCGCCTACGACCTGACGGAGCGTGGGACGGCTGGCGAACTGGGCGGCGACTGCGTGATTGAGGTTGTGCGCGTGA  >  NC_002947/5770535‑5770830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.