New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6117172 =	47 (0.910)	4 (0.080)	4/242	NT	8.7%	coding (1381/1401 nt)	lpd	dihydrolipoyl dehydrogenase
	?	NC_002947	6117223 =	40 (0.830)					intergenic (+31/+81)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein

CACCTGGTGGGCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAA  >  NC_002947/6117025‑6117313                                                                                                                                                    |                                                                                                                                              cACCTGGTGGGCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGatgg                                                                                                                                              >  8:45333/1‑149 (MQ=255)  aCCTGGTGGGCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGatggc                                                                                                                                             <  4:316376/149‑1 (MQ=255)  aCCTGGTGGGCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGatggc                                                                                                                                             <  8:48076/149‑1 (MQ=255)   gctgcatgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCa                                                                                                                                            >  5:207017‑M1/146‑149 (MQ=255)     tgcatgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCAt                                                                                                                                           <  6:298394‑M1/5‑1 (MQ=255)       gtggGCCCAAGCGTCAGCGAGATTATTTGTGATTTCTGCGTGGCTATTGAGTTCTCGGCCTCGGCAGAAGATATGGCCCTCACCTGCCACCCTGACGCGACGCGCTCCGAGGACCTGCGCCATGCGGCGATGTATGTGGattggatggc                                                                                                                                        <  4:151287/149‑1 (MQ=255)       catgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCAt                                                                                                                                           >  5:298394‑M1/142‑146 (MQ=255)        atgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGcc                                                                                                                                       <  5:251791‑M1/9‑1 (MQ=255)          ggCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCAt                                                                                                                                     <  3:294666/149‑1 (MQ=255)             ccAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGc                                                                                                                                   >  8:81545/1‑148 (MQ=255)               aaGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCaaa                                                                                                                                <  5:97666/149‑1 (MQ=255)                aGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAAt                                                                                                                               <  3:62672/149‑1 (MQ=255)                                   gTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCt                                                                                                            >  5:135348/1‑149 (MQ=255)                                      aGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCg                                                                                                         >  3:141058/1‑149 (MQ=255)                                                   tATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGccc                                                                                            >  5:333746/1‑149 (MQ=255)                                                     aggcttggctgtgacgtgatgcctgaagatagagccggccggatttaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGcc                                                                                                  >  5:185799‑M1/96‑141 (MQ=255)                                                     aggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGcc                                                                                                  <  6:185799‑M1/46‑1 (MQ=255)                                                       gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                        >  7:17966/1‑149 (MQ=255)                                                       gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                        >  3:296365/1‑149 (MQ=255)                                                       gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                        >  8:189287/1‑149 (MQ=255)                                                       gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                        <  8:44750/149‑1 (MQ=255)                                                             tcggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCgg                                                                                  >  2:324455/1‑149 (MQ=255)                                                               ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCgg                                                                                  <  4:141058/147‑1 (MQ=255)                                                               ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAACCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCg                                                                                   <  1:69131/146‑1 (MQ=255)                                                                  ctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAttt                                                                             <  2:292489/149‑1 (MQ=255)                                                                    cggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGACTTCGGCAtttgc                                                                           >  6:251791/1‑149 (MQ=255)                                                                     tgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCtt                                                                                          >  2:129192‑M1/80‑133 (MQ=255)                                                                     tgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCtt                                                                                          <  1:129192‑M1/54‑1 (MQ=255)                                                                        agaagaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAtttgctttg                                                                       >  4:172897/1‑149 (MQ=255)                                                                         gaagaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAtttgctttgc                                                                      <  5:171158/149‑1 (MQ=255)                                                                           agaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTAGCgg                                                                    <  7:189287/149‑1 (MQ=255)                                                                            gaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCggg                                                                   <  5:75090/149‑1 (MQ=255)                                                                                tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                               <  2:229296/149‑1 (MQ=255)                                                                                  gCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                               >  4:301599/1‑147 (MQ=255)                                                                                    ccTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAgg                                                           <  4:296365/149‑1 (MQ=255)                                                                                      tCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGa                                                         >  2:231989/1‑149 (MQ=255)                                                                                            gCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGGCAGAgc                                                   >  5:161258/1‑149 (MQ=255)                                                                                             ccACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAgcc                                                  <  1:324455/149‑1 (MQ=255)                                                                                              cacccgcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAg                                                            >  7:269354/1‑138 (MQ=255)                                                                                              cacccgcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAg                                                            <  8:269354/138‑1 (MQ=255)                                                                                                     acccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTaa                                          <  6:333746/149‑1 (MQ=255)                                                                                                            gcgcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                   >  7:245685/1‑149 (MQ=255)                                                                                                             cgcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGTCAGAGCCGCCTTTAATTccggcc                                  <  6:161258/149‑1 (MQ=255)                                                                                                              gcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgg                                                                    >  1:282189/1‑114 (MQ=255)                                                                                                              gcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgg                                                                    <  2:282189/114‑1 (MQ=255)                                                                                                               cTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                   >  7:274358/1‑146 (MQ=255)                                                                                                               cTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                   <  8:274358/146‑1 (MQ=255)                                                                                                                      gCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATc                         <  7:45333/149‑1 (MQ=255)                                                                                                                         cTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATc                         >  3:30370/1‑146 (MQ=255)                                                                                                                         cTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATc                         <  4:30370/146‑1 (MQ=255)                                                                                                                            cgcCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCa                     <  3:172897/147‑1 (MQ=255)                                                                                                                                aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGc                                                                  <  4:280166/98‑1 (MQ=255)                                                                                                                                aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCAt                >  5:19536/1‑148 (MQ=255)                                                                                                                                aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATc               <  6:19536/149‑1 (MQ=255)                                                                                                                                aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCAGGCATACAgg                                                           >  2:318515/1‑105 (MQ=255)                                                                                                                                aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCAGGCATACAgg                                                           <  1:318515/105‑1 (MQ=255)                                                                                                                                        aTGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTca         >  7:4537/1‑147 (MQ=255)                                                                                                                                             tgtgGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCGTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCaa  <  1:231989/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              CACCTGGTGGGCCCAAGCGTCAGCGAGATGATTGGTGAGTTCTGCGTGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAA  >  NC_002947/6117025‑6117313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.