New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6117172 =	47 (0.910)	4 (0.080)	4/242	NT	8.7%	coding (1381/1401 nt)	lpd	dihydrolipoyl dehydrogenase
	?	NC_002947	6117223 =	40 (0.830)					intergenic (+31/+81)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein

TATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGC  >  NC_002947/6117075‑6117367                                                                                                                                                     |                                                                                                                                                 tATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGccc                                                                                                                                                  >  5:333746/1‑149 (MQ=255)     gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                                                                              <  8:44750/149‑1 (MQ=255)     gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                                                                              >  3:296365/1‑149 (MQ=255)     gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                                                                              >  7:17966/1‑149 (MQ=255)     gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                                                                              >  8:189287/1‑149 (MQ=255)           tcggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCgg                                                                                                                                        >  2:324455/1‑149 (MQ=255)             ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCgg                                                                                                                                        <  4:141058/147‑1 (MQ=255)             ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAACCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCg                                                                                                                                         <  1:69131/146‑1 (MQ=255)                ctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAttt                                                                                                                                   <  2:292489/149‑1 (MQ=255)                  cggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGACTTCGGCAtttgc                                                                                                                                 >  6:251791/1‑149 (MQ=255)                   tgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCtt                                                                                                                                                <  1:129192‑M1/54‑1 (MQ=255)                   tgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtatgcccgcaaagcaaatgccgaaggcaagGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCtt                                                                                                                                                >  2:129192‑M1/80‑133 (MQ=255)                      agaagaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAtttgctttg                                                                                                                             >  4:172897/1‑149 (MQ=255)                       gaagaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAtttgctttgc                                                                                                                            <  5:171158/149‑1 (MQ=255)                         agaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTAGCgg                                                                                                                          <  7:189287/149‑1 (MQ=255)                          gaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCggg                                                                                                                         <  5:75090/149‑1 (MQ=255)                              tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                                                                                     <  2:229296/149‑1 (MQ=255)                                gCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                                                                                     >  4:301599/1‑147 (MQ=255)                                  ccTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAgg                                                                                                                 <  4:296365/149‑1 (MQ=255)                                    tCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGa                                                                                                               >  2:231989/1‑149 (MQ=255)                                          gCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGGCAGAgc                                                                                                         >  5:161258/1‑149 (MQ=255)                                           ccACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAgcc                                                                                                        <  1:324455/149‑1 (MQ=255)                                            cacccgcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAg                                                                                                                  <  8:269354/138‑1 (MQ=255)                                            cacccgcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAg                                                                                                                  >  7:269354/1‑138 (MQ=255)                                                   acccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTaa                                                                                                <  6:333746/149‑1 (MQ=255)                                                          gcgcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                                                                         >  7:245685/1‑149 (MQ=255)                                                           cgcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGTCAGAGCCGCCTTTAATTccggcc                                                                                        <  6:161258/149‑1 (MQ=255)                                                            gcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgg                                                                                                                          <  2:282189/114‑1 (MQ=255)                                                            gcTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgg                                                                                                                          >  1:282189/1‑114 (MQ=255)                                                             cTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                                                                         <  8:274358/146‑1 (MQ=255)                                                             cTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggc                                                                                         >  7:274358/1‑146 (MQ=255)                                                                    gCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATc                                                                               <  7:45333/149‑1 (MQ=255)                                                                       cTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATc                                                                               <  4:30370/146‑1 (MQ=255)                                                                       cTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATc                                                                               >  3:30370/1‑146 (MQ=255)                                                                          cgcCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCa                                                                           <  3:172897/147‑1 (MQ=255)                                                                              aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGc                                                                                                                        <  4:280166/98‑1 (MQ=255)                                                                              aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCAt                                                                      >  5:19536/1‑148 (MQ=255)                                                                              aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATc                                                                     <  6:19536/149‑1 (MQ=255)                                                                              aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCAGGCATACAgg                                                                                                                 <  1:318515/105‑1 (MQ=255)                                                                              aGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCAGGCATACAgg                                                                                                                 >  2:318515/1‑105 (MQ=255)                                                                                      aTGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTca                                                               >  7:4537/1‑147 (MQ=255)                                                                                           tgtgGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCGTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCaa                                                        <  1:231989/149‑1 (MQ=255)                                                                                               aagggcatggcctgacgcagcgaatggggctcgtcagatttgcatggccatgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCa                                                                    <  1:129192‑M2/79‑1 (MQ=255)                                                                                               aagggcatggcctgacgcagcgaatggggctcgtcagatttgcatggccatgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCa                                                                    >  2:129192‑M2/55‑133 (MQ=255)                                                                                                   GCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCTTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGa                                                 >  7:81545‑M1/1‑148 (MQ=255)                                                                                                   GCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGa                                                 >  8:245685‑M1/1‑148 (MQ=255)                                                                                                       ggcctgacgcagcgaatggggctcgtcagatttgcatggccatgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCt                                                    <  6:185799‑M2/95‑1 (MQ=255)                                                                                                       ggcctgacgcagcgaatggggctcgtcagatttgcatggccatgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAAATCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCt                                                    >  5:185799‑M2/47‑141 (MQ=255)                                                                                                               aaaTCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAAAGCCGCCTTTAATTCCGGCCGGCTCAAAATTAAGGCATCAAGTCACACACAAGCCTTGATATGAGCGCTCa                                     >  2:295632/1‑148 (MQ=255)                                                                                                                         aGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTg                          <  3:301599/149‑1 (MQ=255)                                                                                                                           ccccATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGa                                                 >  2:169910/1‑124 (MQ=255)                                                                                                                           ccccATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGa                                                 <  1:169910/124‑1 (MQ=255)                                                                                                                           ccccATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGga                        <  1:295632/149‑1 (MQ=255)                                                                                                                                            ggccatgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCAt       <  5:251791‑M2/140‑1 (MQ=255)                                                                                                                                                atgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATg      >  5:298394‑M2/6‑146 (MQ=255)                                                                                                                                                atgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCa    <  6:298394‑M2/143‑1 (MQ=255)                                                                                                                                                 tgccCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGc  >  5:207017‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGC  >  NC_002947/6117075‑6117367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.