New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	693811 =	39 (0.760)	4 (0.080)	4/246	NT	10.1%	coding (231/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	693892 =	34 (0.700)					coding (150/918 nt)	PP_0595	LysR family transcriptional regulator

GTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTCGGCTCA  >  NC_002947/693745‑694040                                                                                                                                                    |                                                                                                                                                     ggtggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGt                                                                                                                                                     >  6:91793‑M1/67‑149 (MQ=255) gTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCga                                                                                                                                                     >  5:65843/1‑148 (MQ=255)   tggcttctcggctgccgaaaacgtactgggcattggtcgctcggccatcagccagcagatgaacGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCTCAGGCCGAGGCGTTGCTCGAGGTCGTTc                                                                                                                                                   >  8:26615‑M1/65‑149 (MQ=255)   gCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGtt                                                                                                                                                    >  5:168340/1‑148 (MQ=255)             gACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTgctggc                                                                                                                                         >  5:165265/1‑149 (MQ=255)              aCCTCGGTGCTGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTgctggc                                                                                                                                         <  8:54203/148‑1 (MQ=255)                cTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGa                                                                                                                                      >  2:165603/1‑149 (MQ=255)                 tCGGTGCGTAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGTTGAATGGTAGACCTCTGGGCATTCCTGCGTCTGCGATAAACCGGCTAGGCCGCGTTGACACTGGCGCAGGCAGAGGCGTTGCTCGAGGTCGTTAATCTGCTGGCTTAt                                                                                                                                     <  2:14450/149‑1 (MQ=255)                        ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg                                                                                                                              >  3:255947/1‑149 (MQ=255)                        ggAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAg                                                                                                                              >  1:38213/1‑149 (MQ=255)                         gAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGc                                                                                                                             >  1:227699/1‑149 (MQ=255)                            ggTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGAc                                                                                                                          >  1:117362/1‑149 (MQ=255)                                               aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                                                       <  3:241621/149‑1 (MQ=255)                                               aGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                                                       <  6:65843/149‑1 (MQ=255)                                                gTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCg                                                                                                      <  1:318484/149‑1 (MQ=255)                                                     aGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGc                                                                                                 <  6:168340/149‑1 (MQ=255)                                                      gggCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGcc                                                                                                >  4:42940/1‑149 (MQ=255)                                                          tGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCgag                                                                                             >  2:171651/1‑148 (MQ=255)                                                            aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa                                                                                           <  1:209431/148‑1 (MQ=255)                                                            aaTGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGaa                                                                                           <  4:255947/148‑1 (MQ=255)                                                               gaacgacctcgagcaacgcctcggcctgagcctgtgtcagcgcggccgcgccggtttctcgctgacggaggaaggccgcgaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCa                                                                                       >  8:26615‑M2/86‑149 (MQ=255)                                                                gTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCAc                                                                                      >  5:122308/1‑149 (MQ=255)                                                                 tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                                                       >  3:166057/1‑131 (MQ=255)                                                                 tAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTc                                                                                                       <  4:166057/131‑1 (MQ=255)                                                                 acgacctcgagcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctgacggaggaaggccgcgaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCAcc                                                                                     >  6:91793‑M2/84‑149 (MQ=255)                                                                   GACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCg                                                                                    >  1:165603‑M1/1‑148 (MQ=255)                                                                      CTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACt                                                                                <  4:276615‑M1/149‑1 (MQ=255)                                                                          agcaacgcctcggcctgcgcctgtgtcagcgcggccgcgccggtttctcgctgacggaggaaggccgcgaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTcgac                                                                            <  5:91793‑M2/75‑1 (MQ=255)                                                                               ttCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGc                                                                       >  2:194935/1‑149 (MQ=255)                                                                                     cGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGa                                                                  <  3:276615/148‑1 (MQ=255)                                                                                      gTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATa                                                                <  1:171651/149‑1 (MQ=255)                                                                                          gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc                                                                                                                  <  7:216945/95‑1 (MQ=255)                                                                                          gCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGccc                                                                                                                  >  8:216945/1‑95 (MQ=255)                                                                                                 aCCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGAt                                                                                                                                     >  1:25177/1‑69 (MQ=255)                                                                                                 aCCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGAt                                                                                                                                     <  2:25177/69‑1 (MQ=255)                                                                                                     gcgcGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACAACGCTGCGATAGATCTTCAGCAGGCg                                                 <  6:122308/149‑1 (MQ=255)                                                                                                           ccGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTc                                           >  4:230295/1‑149 (MQ=255)                                                                                                             cgcgccggtttctcgctgacggaggaaggccgcgaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGa                                         <  7:26615‑M2/110‑1 (MQ=255)                                                                                                               gcTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGaat                                       >  1:281611/1‑148 (MQ=255)                                                                                                                   acacAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCAGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTCCGATAGATCTTCAGCAGGCTGATGTCGAAATCGc                                   >  5:133326/1‑149 (MQ=255)                                                                                                                    cacaGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCt                                  <  3:42940/149‑1 (MQ=255)                                                                                                                       aGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGAc                               >  5:170735/1‑149 (MQ=255)                                                                                                                           gcAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTg                            >  7:3110/1‑148 (MQ=255)                                                                                                                           gcAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTg                            <  8:3110/148‑1 (MQ=255)                                                                                                                                              gaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTc        <  2:227699‑M2/143‑1 (MQ=255)                                                                                                                                              gaggtcGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGAAGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAAGAGCTGACTTgg                           >  8:61463‑M2/7‑130 (MQ=255)                                                                                                                                                    gTTCATGTGCTGGCTCCTGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTCGGCTCa  <  8:66273/149‑1 (MQ=255)                                                                                                                                                    gTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGa                       >  1:122577/1‑128 (MQ=255)                                                                                                                                                    gTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGa                       <  2:122577/128‑1 (MQ=255)                                                                                                                                                    gTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTCGGCTCa  >  7:66273/1‑149 (MQ=255)                                                                                                                                                    gTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTCGGCTCa  >  8:91331/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTGCAGGCCGTTGACCTCGGTGCGGAAGGTTTCCAGCGCGCTGAGCAGTTGCAGGGCTGAATGGTAGACCTCGCGGCCTTCCTCCGTCAGCGAGAAACCGGCGCGGCCGCGCTGACACAGGCGCAGGCCGAGGCGTTGCTCGAGGTCGTTCATCTGCTGGCTGATGGCCGAGCGACCAATGCCCAGTACGTTTTCGGCAGCCGAGAAGCCACCGCACTCGACGACGCTGCGATAGATCTTCAGCAGGCGGATGTCGAAATCGCTGACTTGGGCGAGTGGATCGGGGCGTCGGCTCA  >  NC_002947/693745‑694040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.