New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 77292846 (0.890)5 (0.100) 4/252 NT 9.7% coding (591/1044 nt) PP_0664 homoserine dehydrogenase
?NC_002947 = 772998 49 (0.980)coding (661/1044 nt) PP_0664 homoserine dehydrogenase

CGCGGGCTTGGTAGGTTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAGCGCTGGAAGC  >  NC_002947/772850‑773145
                                                                                                                                                    |                                                                                                                                                   
cgcgggcTTGGTAGGTTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAg                                                                                                                                                     >  4:254894/1‑149 (MQ=255)
 gcgGGCTTGGTAGGTTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGCGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGg                                                                                                                                                    >  7:212090‑M2/1‑148 (MQ=255)
           tAGGGTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTa                                                                                                                                          <  7:240258/149‑1 (MQ=255)
              gTTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGc                                                                                                                                       <  2:190179/149‑1 (MQ=255)
                          ttCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAggtggt                                                                                                                            >  6:164648/1‑148 (MQ=255)
                            ctcAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGa                                                                                                                          <  6:36952/148‑1 (MQ=255)
                                aCGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTc                                                                                                                     <  5:284984/149‑1 (MQ=255)
                                  ggTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGc                                                                                                                   <  2:11605/149‑1 (MQ=255)
                                  ggTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGc                                                                                                                   <  8:92655/149‑1 (MQ=255)
                                       ctctAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAAt                                                                                                               >  7:206133/1‑148 (MQ=255)
                                        tctAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGgcc                                                                                                                                                  >  1:53493‑M2/1‑109 (MQ=255)
                                        tctAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGgcc                                                                                                                                                  <  2:53493‑M2/112‑4 (MQ=255)
                                          tAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGt                                                                                                           >  7:272552/1‑149 (MQ=255)
                                             cTATGTGCTCTCGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAggtgg                                                                                                                             <  8:181268/128‑1 (MQ=255)
                                             cTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAggtgg                                                                                                                             >  7:181268/1‑128 (MQ=255)
                                                      cACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCt                                                                                               >  6:162052/1‑149 (MQ=255)
                                                       aCGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCt                                                                                               <  3:254894/148‑1 (MQ=255)
                                                       aCGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTg                                                                                              >  3:66705/1‑149 (MQ=255)
                                                                  gtgctggcttggtttCAACGCGTGGGTGGCCCCTGCACAATCTCTTGGCTTTGCCGTGGCTTAACCGACCGCCGATTTGGAAGGGCATTACGTACGCCTGAAGGTGTTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAggtgg                                                                                   <  8:206133/144‑1 (MQ=255)
                                                                  ggaAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGCCCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAggtgg                                                                                   >  8:6405/1‑149 (MQ=255)
                                                                      gggCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGgccaagcccttcctccatgcgcgtgagcacatagttagaggtaccgttgagaatgccctcgaaacctac                                                                                <  6:258894‑M2/148‑70 (MQ=255)
                                                                      gggCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGGGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGa                                                                               <  6:271661/149‑1 (MQ=255)
                                                                         cttggcttCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGgccaagcccttcctccatgcgcgtgagcacatagttagaggtaccgttgagaatgccctcgaaacctaccaag                                                                            <  5:184934‑M2/149‑74 (MQ=255)
                                                                         cttggcttCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGccaagcccttcctccatgcgcgtgagcacatagttagaggtaccgttgagaatgccctcgaaacctaccaagc                                                                            <  1:49263‑M2/149‑74 (MQ=255)
                                                                               ttCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTg                                                                      >  2:220087/1‑149 (MQ=255)
                                                                               ttCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTg                                                                      >  1:38637/1‑149 (MQ=255)
                                                                                  aaCGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATg                                                                                                                                               <  3:180709/73‑1 (MQ=255)
                                                                                  aaCGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATg                                                                                                                                               >  4:180709/1‑73 (MQ=255)
                                                                                  aaCGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAg                                                                   >  2:161182/1‑149 (MQ=255)
                                                                                  aaCGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAg                                                                   <  4:66705/149‑1 (MQ=255)
                                                                                   aCGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGc                                                                  >  4:2095/1‑149 (MQ=255)
                                                                                    cGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCg                                                                 <  8:272552/149‑1 (MQ=255)
                                                                                      aGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGt                                                               <  1:161182/149‑1 (MQ=255)
                                                                                          ggTGGCCCAGGCACGAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTc                                                                                                                     >  7:163085/1‑91 (MQ=255)
                                                                                          ggTGGCCCAGGCACCAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTc                                                                                                                     <  8:163085/91‑1 (MQ=255)
                                                                                                ccAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAg                                                                                                            >  5:159780/1‑94 (MQ=255)
                                                                                                ccAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAg                                                                                                            <  6:159780/94‑1 (MQ=255)
                                                                                                ccAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCa                                                           <  6:158754/143‑1 (MQ=255)
                                                                                                ccAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAgagatc                                                     >  5:158754/1‑144 (MQ=255)
                                                                                                 cAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCAt                                                    >  3:4199/1‑149 (MQ=255)
                                                                                                  aGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATc                                                   <  8:107399/149‑1 (MQ=255)
                                                                                                      acaAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGa                                                 >  7:308578/1‑147 (MQ=255)
                                                                                                       caAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAg                                              <  2:38637/149‑1 (MQ=255)
                                                                                                        aaGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGgtggtg                                                                                                                           >  3:214116/1‑71 (MQ=255)
                                                                                                        aaGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGgtggtg                                                                                                                           <  4:214116/71‑1 (MQ=255)
                                                                                                                ggCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTa                                      <  3:15328/148‑1 (MQ=255)
                                                                                                                      gCCGAGGCTGACCCGACCGCCGATGTGGAAGgccaagcccttcctccatgcgcgtgagcacatagttagaggtaccgttgagaatgccctcgaaacctaccaagcccgcgcccgccagggtctggcgcgccatacgcagcaccggtgt                                >  5:258894‑M2/1‑31 (MQ=255)
                                                                                                                       ccGAGGCTGACGCGACCGCCGATTTGGAAGGCCTTGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCAt                                                    <  2:186384/127‑1 (MQ=255)
                                                                                                                       ccGAGGCTGACCCGACCGCCGATGTGGAAGccaagcccttcctccatgcgcgtgagcacatagttagaggtaccgttgagaatgccctcgaaacctaccaagcccgcgcccgccagggtctggcgcgccatacgcagcaccggtgtgc                               >  2:49263‑M2/1‑30 (MQ=255)
                                                                                                                       ccGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTCCGCCTGAAGGTGCTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCAt                                                    >  1:186384/1‑127 (MQ=255)
                                                                                                                           ggCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCAc                          >  4:322358/1‑149 (MQ=255)
                                                                                                                                  ccGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCgg                                         >  2:186878/1‑127 (MQ=255)
                                                                                                                                  ccGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCgg                                         <  1:186878/127‑1 (MQ=255)
                                                                                                                                  ccGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGggcggc                   >  4:163198/1‑149 (MQ=255)
                                                                                                                                    gACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGcggcgg                 <  3:322358/149‑1 (MQ=255)
                                                                                                                                    gACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGGGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGcggcgg                 <  8:308578/149‑1 (MQ=255)
                                                                                                                                        gccgATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGa             <  3:163198/149‑1 (MQ=255)
                                                                                                                                          cgATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAgc           >  5:130892/1‑149 (MQ=255)
                                                                                                                                          cgATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAgc           >  3:36209/1‑149 (MQ=255)
                                                                                                                                          cgATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAgc           >  2:176825/1‑149 (MQ=255)
                                                                                                                                                   aGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAGCGCTGGAAGc  <  4:4199/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CGCGGGCTTGGTAGGTTTCGAGGGCATTCTCAACGGTACCTCTAACTATGTGCTCACGCGCATGGAGGAAGGGCTTGGCTTCAACGAGGCGGTGGCCCAGGCACAAGCGCTTGGCTTTGCCGAGGCTGACCCGACCGCCGATGTGGAAGGCCATGACGTACGCCTGAAGGTGGTGATCCTCGCCAATGAGTTGCTCGGCGCCTGTCTGCAGGTGGGTGATGTGGCCTGCAGCGGTATCAGTGCCATCGACAGCGCGGCTATCGAGCGGGCACGGGCGGCGGGCGAGCGCTGGAAGC  >  NC_002947/772850‑773145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.