New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3266247 =	41 (0.790)	3 (0.060)	3/246	NT	6.8%	coding (267/372 nt)	PP_2864	hypothetical protein
	?	NC_002947	3266291 =	43 (0.880)					coding (223/372 nt)	PP_2864	hypothetical protein

CACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCGGATGCCGCCCCATTTGTAGTCTTCCCGC  >  NC_002947/3266143‑3266439                                                                                                                                                      |                                                                                                                                                     agaaaacaagatgttcgcggtgctcgacctggcgggtgccgggttgtcgttcaaggtagccgacgagctgtttctgggttattgcgatcgacccgggatacggcCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccgg                                                                                                                                                      >  2:40682‑M1/105‑149 (MQ=255)    aTGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccggccg                                                                                                                                                   >  7:176212/1‑149 (MQ=255)    aTGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccggccg                                                                                                                                                   >  7:170797/1‑149 (MQ=255)    aTGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTGCATCACGCCCCATGGGGTAGGGCGGCACCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccggccg                                                                                                                                                   >  4:54878/1‑149 (MQ=255)          aaCCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATccc                                                                                                                                             <  3:7102/149‑1 (MQ=255)          aaCCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATccc                                                                                                                                             >  5:233280/1‑149 (MQ=255)            ccccACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCgg                                                                                                                                           <  8:167605/149‑1 (MQ=255)                    gCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCg                                                                                                                                            >  5:335068/1‑140 (MQ=255)                    gCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCg                                                                                                                                            <  6:335068/140‑1 (MQ=255)                       aCCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCaa                                                                                                                                <  8:170797/149‑1 (MQ=255)                              gggCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAAcc                                                                                                                           <  1:163688/147‑1 (MQ=255)                                           aCTACCAGCTGGTGCGACCGCTGCAACACCTAACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCAGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACACCtcgac                                                                                                            >  3:98085/1‑147 (MQ=255)                                                    tGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCtt                                                                                                   >  3:130974/1‑149 (MQ=255)                                                        gCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAAc                                                                                               <  8:175733/149‑1 (MQ=255)                                                         cGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAAc                                                                                               <  8:176212/148‑1 (MQ=255)                                                           aCCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGGCGGCTCCCTTGAACgc                                                                                             >  4:10907/1‑147 (MQ=255)                                                                           acacaGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGc                                                                              >  6:168203/1‑147 (MQ=255)                                                                            cacaGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAg                                                                           >  6:190307/1‑149 (MQ=255)                                                                             acaGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccggc                                                                                                                                                     >  7:166159/1‑74 (MQ=255)                                                                             acaGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCg‑ccggc                                                                                                                                                     <  8:166159/74‑1 (MQ=255)                                                                             acaGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAgg                                                                          <  4:130974/149‑1 (MQ=255)                                                                               aGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTc                                                                        >  5:322873/1‑149 (MQ=255)                                                                                 ttCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCa                                                                                                                         >  3:175269/1‑98 (MQ=255)                                                                                 ttCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCa                                                                                                                         <  4:175269/98‑1 (MQ=255)                                                                                  tcatcaCGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAg                                                                     >  3:149839/1‑149 (MQ=255)                                                                                    atcaCGACCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACTGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCACAAACAGCTCGTCGGCAACCATGAACGAAAACCCCGCACCCCCCAGGTCGAACa                                                                   >  8:124252/1‑149 (MQ=255)                                                                                     tcaCGCCCCATGTGGTAGGGCGGCGCCATGCTGACCCACCGCGCACGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCAc                                                                  >  8:134149/1‑149 (MQ=255)                                                                                     tcaCGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCAc                                                                  >  8:182267/1‑149 (MQ=255)                                                                                        cGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACcgc                                                               <  5:16345/149‑1 (MQ=255)                                                                                         gCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCg                                                                                                                                   >  3:274417/1‑80 (MQ=255)                                                                                         gCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCg                                                                                                                                   <  4:274417/80‑1 (MQ=255)                                                                                         gCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCAGTATCCAGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACcgc                                                               >  1:218243/1‑148 (MQ=255)                                                                                               tGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATc                                                        <  5:168203/149‑1 (MQ=255)                                                                                               tGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATc                                                        <  6:233280/149‑1 (MQ=255)                                                                                                 gggTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCtt                                                      <  4:149839/149‑1 (MQ=255)                                                                                                 gggTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCtt                                                      <  7:182267/149‑1 (MQ=255)                                                                                                  ggTAGGGCGGCACCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTg                                                     <  3:54878/149‑1 (MQ=255)                                                                                                         ccggcgccgtacctggcgcgggcgcggtgggtcagcatggcgccgGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCt                                               >  2:40682‑M2/46‑149 (MQ=255)                                                                                                          cggcgccgtacctggcgcgggcgcggtgggtcagcatggcgccgGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTg                                              >  5:278963‑M2/45‑149 (MQ=255)                                                                                                            CGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGc                                                                              <  1:321129‑M1/114‑1 (MQ=255)                                                                                                            CGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGc                                                                              >  2:321129‑M1/1‑114 (MQ=255)                                                                                                             cgccgtacctggcgcgggcgcggtgggtcagcatggcgccgGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCa                                           <  1:40682‑M2/108‑1 (MQ=255)                                                                                                                 tGCTGACCCACCGCGCCAGCTCCAGTTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCAAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCACGTCGAGCACCGCGAACATCTTGTATTCTTCCACCGa                                       >  4:207943/1‑148 (MQ=255)                                                                                                                        ccACCGCGCGCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGGCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTc                               <  1:165942/149‑1 (MQ=255)                                                                                                                         caacgcgaccgcgccATTTACGGCG‑CAGGACGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCTGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGTGGCAGAAAacaagat                              <  7:124252/146‑5 (MQ=255)                                                                                                                         cACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCg                              <  3:207943/149‑1 (MQ=255)                                                                                                                          aCCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATACCCCAGAACCAGCTCGTCGGCTACCTTGAACGACAACCCGGCCCCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGc                                             <  4:50849/133‑1 (MQ=255)                                                                                                                          aCCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGc                                             >  3:50849/1‑133 (MQ=255)                                                                                                                               gcccgcgccAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCGGATgcc                        >  6:23306/1‑149 (MQ=255)                                                                                                                                  cgcgccAGGTACGGCGCCCGGCCGTATCCCGGGTCGATCGCaa                                                                                                                                <  1:171480/43‑1 (MQ=255)                                                                                                                                  cgcgccAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCaa                                                                                                                                >  2:171480/1‑42 (MQ=255)                                                                                                                                    cgccAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCGGATGCCGccc                    >  1:52664/1‑148 (MQ=255)                                                                                                                                        aGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGa                                                                      >  2:46522/1‑94 (MQ=255)                                                                                                                                        aGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGa                                                                      <  1:46522/94‑1 (MQ=255)                                                                                                                                                      gccgTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCGGATGCCGCCCCATTTGTAGTCTTCCcgc  <  3:10907/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CACATGACCAACCCCACCTGCAACCGCTTGGGCAACCGACGCACTACCAGCTGGTGCGACCGCTGCAACACCTCACACAGTTCATCACGCCCCATGGGGTAGGGCGGCGCCATGCTGACCCACCGCGCCCGCGCCAGGTACGGCG‑CCGGCCGTATCCCGGGTCGATCGCAATAACCCAGAAACAGCTCGTCGGCTACCTTGAACGACAACCCGGCACCCGCCAGGTCGAGCACCGCGAACATCTTGTTTTCTGCCACCGAAAACACTCGGATGCCGCCCCATTTGTAGTCTTCCCGC  >  NC_002947/3266143‑3266439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.