New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3471591 =	53 (1.030)	5 (0.100)	4/248	NT	9.9%	coding (941/2460 nt)	PP_3084	ferric siderophore receptor
	?	NC_002947	3471661 =	40 (0.810)					coding (871/2460 nt)	PP_3084	ferric siderophore receptor

AGGGCTACGGCAAGCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGACCCGCTCGAGT  >  NC_002947/3471513‑3471806                                                                                                                                                     |                                                                                                                                                  aGGGCTACGGCAAGCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGt                                                                                                                                                   >  6:68529/1‑149 (MQ=255)  gggCTACGGCAAGCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTg                                                                                                                                                  <  6:132537/149‑1 (MQ=255)  catcggaggggcgatcaacctggtgcccaagcgtgccgaagatagcgccacgcggcatgtcaccctcgactacgccaCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTg                                                                                                                                                  >  7:140175‑M1/78‑149 (MQ=255)    tcggaggggcgatcaacctggtgcccaagcgtgccgaagatagcgccacgcggcatgtcaccctcgactacgccaCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGc                                                                                                                                                >  1:177669‑M1/76‑149 (MQ=255)        aggggcgatcaacctggtgcccaagcgtgccgaagatagcgccacgcggcatgtcaccctcgactacgccaCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGc                                                                                                                                                >  8:82465‑M1/72‑145 (MQ=255)            aaGCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTc                                                                                                                                          >  6:133997/1‑147 (MQ=255)              gCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAgg                                                                                                                                      <  5:120755/149‑1 (MQ=255)              gCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAgg                                                                                                                                      <  4:236955/149‑1 (MQ=255)               cAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAggg                                                                                                                                     <  7:157060/149‑1 (MQ=255)                               gCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGgc                                                                                                                     <  5:133997/149‑1 (MQ=255)                                    gTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGTCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTa                                                                                                                 <  8:112126/148‑1 (MQ=255)                                    gTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCt                                                                                                                  <  6:94840/147‑1 (MQ=255)                                       aTCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCtt                                                                                                             <  8:200880/149‑1 (MQ=255)                                       aTCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCtt                                                                                                             <  6:63821/149‑1 (MQ=255)                                                gCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCt                                                                                                    >  3:285679/1‑149 (MQ=255)                                                gCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCt                                                                                                    >  3:99569/1‑149 (MQ=255)                                                    ccACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTggg                                                                                                >  1:20276/1‑149 (MQ=255)                                                       ccGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCAc                                                                                             <  2:20276/149‑1 (MQ=255)                                                            aTGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCCCCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGt                                                                                        <  4:28723/149‑1 (MQ=255)                                                                tGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCCCCAGGTTGAt                                                                                    >  6:303927/1‑149 (MQ=255)                                                                tGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGAt                                                                                    >  3:145425/1‑149 (MQ=255)                                                                  aGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATc                                                                                   <  5:68529/148‑1 (MQ=255)                                                                   gCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGc                                                                                 <  4:285679/149‑1 (MQ=255)                                                                     cAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGccc                                                                               >  6:314854/1‑149 (MQ=255)                                                                         ttGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTcc                                                                           >  5:299705/1‑149 (MQ=255)                                                                           gccacgggcgacaacgtgggtggccacctcgacctgggccagcgttttggtgaagacaaccgttttggcgcccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCt                                                                             >  8:82465‑M2/75‑145 (MQ=255)                                                                           gccacgggcgacaacgtgggtggccacctcgacctgggccagcgttttggtgaagacaaccgttttggcgcccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGa                                                                         >  1:177669‑M2/75‑149 (MQ=255)                                                                           gATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGa                                                                         >  1:10070/1‑149 (MQ=255)                                                                             cacgggcgacaacgtgggtggccacctcgacctgggccagcgttttggtgaagacaaccgttttggcgcccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATg                                                                       >  7:140175‑M2/73‑149 (MQ=255)                                                                                   CGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTa                                                                 >  4:145425‑M1/1‑149 (MQ=255)                                                                                    GCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTAc                                                                >  1:165361‑M1/1‑149 (MQ=255)                                                                                      cAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCgg                                                                                                          <  6:105542/105‑1 (MQ=255)                                                                                      cAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCgg                                                                                                          >  5:105542/1‑105 (MQ=255)                                                                                      cAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTAccc                                                              >  2:214086/1‑149 (MQ=255)                                                                                       aaaaCGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCt                                                             <  7:279504/149‑1 (MQ=255)                                                                                       aaaaCGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCt                                                             >  3:228876/1‑149 (MQ=255)                                                                                           tgggtggccacctcgacctgggccagcgttttggtgaagacaaccgttttggcgcccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTgg                                                         <  7:82465‑M2/91‑1 (MQ=255)                                                                                              ttGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCCGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGgcgc                                                      >  7:251045/1‑149 (MQ=255)                                                                                                  cTTCACCAAAACGCTGGCCCAGGTCGCGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGAcc                                                  >  3:49048/1‑149 (MQ=255)                                                                                                       ccAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCgg                                                                                                          <  3:18709/88‑1 (MQ=255)                                                                                                       ccAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCgg                                                                                                          >  4:18709/1‑88 (MQ=255)                                                                                                        cAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCAcc                                                                                            >  2:11251/1‑101 (MQ=255)                                                                                                        cAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCAcc                                                                                            <  1:11251/101‑1 (MQ=255)                                                                                                            aCGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGaa                                        <  5:314854/149‑1 (MQ=255)                                                                                                                    gcgttttggtgaagacaaccgttttggcgcccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTg                                <  2:177669‑M2/116‑1 (MQ=255)                                                                                                                     cAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCATAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTg                                >  7:18817/1‑148 (MQ=255)                                                                                                                                 gCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCAc                                  <  6:322567/134‑1 (MQ=255)                                                                                                                                 gCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCAc                                  >  5:322567/1‑134 (MQ=255)                                                                                                                                        acGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGAc            >  7:300849/1‑149 (MQ=255)                                                                                                                                        acGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGAc            <  4:228876/149‑1 (MQ=255)                                                                                                                                        acGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGAc            >  4:88240/1‑149 (MQ=255)                                                                                                                                         cGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGAcc           <  6:299705/149‑1 (MQ=255)                                                                                                                                                  ccgTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGACCCGCTCGAGt  <  1:214086‑M2/146‑1 (MQ=255)                                                                                                                                                    gTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTAcc                                                               >  3:219426‑M2/2‑86 (MQ=255)                                                                                                                                                    gTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTAcc                                                               <  4:219426‑M2/85‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGGGCTACGGCAAGCAGGGTGGAATGCTGGGCCTCGTCATCGATGCCGCTGCCACCGTCATGCTGAGCCAGGTTGATGCGGGCGCCAAAACGGTTGTCTTCACCAAAACGCTGGCCCAGGTCGAGGTGGCCACCCACGTTGTCGCCCGTGGCGTAGTCGAGGGTGACATGCCGCGTGGCGCTATCTTCGGCACGCTTGGGCACCAGGTTGATCGCCCCTCCGATGCCGCTACCCTGTGGCGCGACCCCATTGAGAAAAGCACTGGAACCCTTGAATACTTCGACCCGCTCGAGT  >  NC_002947/3471513‑3471806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.