New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4096282 =	50 (0.970)	5 (0.100)	5/250	NT	10.6%	coding (614/651 nt)	PP_5607	membrane protein
	?	NC_002947	4096343 =	36 (0.730)					intergenic (+24/‑51)	PP_5607/PP_5608	membrane protein/hypothetical protein

GTGGCCAGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACTGAGCCAGAACGATCGCCACACCT  >  NC_002947/4096195‑4096490                                                                                                                                                     |                                                                                                                                                    gTGGCCAGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTg                                                                                                                                                     >  5:227932/1‑149 (MQ=255) caggcagccggccatcgttgctagaagtactcgcatgttgctgtcctaagcatctgaaagaaaacggagtttgccttcgctttccgcAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTg                                                                                                                                                     >  3:131943‑M1/88‑149 (MQ=255)      cAGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGa                                                                                                                                                 >  3:14745/1‑148 (MQ=255)       aGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGaaa                                                                                                                                               <  2:39474/149‑1 (MQ=255)       aGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGaaa                                                                                                                                               <  5:262098/149‑1 (MQ=255)        gCTGTTCGGCCTGTATCTCCGCCTTAACTATGCTGTATCCGTGCTCTGGGTTGCCAGCCTGGCCTGGACACGTCTGCGGAACCCGAAGGCCAGTCCCCTGCGCATGGCTGTGACCAGACGGCAAATTGCTGGCCCACGGCGGCGGaaa                                                                                                                                               >  8:118486/1‑148 (MQ=255)              cGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCAAAg                                                                                                                                         <  8:96581/148‑1 (MQ=255)                           cGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGtttt                                                                                                                           <  1:10494/149‑1 (MQ=255)                            gCCTTACATATTGTGTTTCGGTGCTCTGGGTTTCCAGCATGGCCTGGACATGTCTGCGGAAGCCGAAGGCGAGTCCCCTGCGCATGGCTGTGCGCTGACGGCAAATTGCTGGCCCAGGGCTGCGGAAAGCGATGGCAAACTCCGTtttc                                                                                                                          <  7:118486/149‑1 (MQ=255)                             ccTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTtttct                                                                                                                         <  3:25138/149‑1 (MQ=255)                                    tATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTtttc                                                                                                                          >  7:111960/1‑141 (MQ=255)                                    tATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTtttc                                                                                                                          <  8:111960/141‑1 (MQ=255)                                    tATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGAt                                                                                                                  >  8:298001/1‑149 (MQ=255)                                              cGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACa                                                                                                        <  6:90828/149‑1 (MQ=255)                                                gTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGc                                                                                                      <  3:287558/149‑1 (MQ=255)                                                   ctctGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCTCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGAt                                                                                                                  <  3:79785/134‑1 (MQ=255)                                                   ctctGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGAt                                                                                                                  >  4:79785/1‑134 (MQ=255)                                                     ctGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACAt                                                                                                 >  8:77714/1‑149 (MQ=255)                                                         gTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGa                                                                                             <  4:14745/149‑1 (MQ=255)                                                             ccAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTcc                                                                                                                                <  2:120717/110‑1 (MQ=255)                                                             ccAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTcc                                                                                                                                >  1:120717/1‑110 (MQ=255)                                                                       ctggACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCtt                                                                                                              <  3:246718/118‑1 (MQ=255)                                                                       ctggACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCtt                                                                                                              >  4:246718/1‑118 (MQ=255)                                                                          gACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGAt                                                                            >  3:105827/1‑149 (MQ=255)                                                                                tCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCgg                                                                      >  1:69970/1‑149 (MQ=255)                                                                                tCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCgg                                                                      >  2:205343/1‑149 (MQ=255)                                                                                tCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACAGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCgg                                                                      >  3:194618/1‑149 (MQ=255)                                                                                       cagccgtgggccagcaatttgccgtcagggcacagccatgcgcaggggactggccttcggctGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGctgcctg                                                               >  3:131943‑M2/63‑149 (MQ=255)                                                                                        agccgtgggccagcaatttgccgtcagggcacagccatgcgcaggggactggccttcggctGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGctgcctgc                                                              >  3:50350‑M2/62‑149 (MQ=255)                                                                                          ccgtgggccagcaatttgccgtcagggcacagccatgcgcaggggactggccttcggctGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCctgctg                                                            <  4:131943‑M2/90‑1 (MQ=255)                                                                                            gtgggccagcaatttgccgtcagggcacagccatgcgcaggggactggcccacggctGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGc                                                          >  1:221225‑M2/58‑149 (MQ=255)                                                                                            GAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGctgc                                                                  >  5:152698‑M1/1‑141 (MQ=255)                                                                                            GAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGctgc                                                                  <  6:152698‑M1/141‑1 (MQ=255)                                                                                             aaGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGc                                                          >  2:154157/1‑148 (MQ=255)                                                                                                 ccAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCAccc                                                     >  4:320248/1‑149 (MQ=255)                                                                                                         cTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTc                                             <  3:320248/149‑1 (MQ=255)                                                                                                         cTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTc                                             <  7:77714/149‑1 (MQ=255)                                                                                                         cTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTc                                             <  2:69970/149‑1 (MQ=255)                                                                                                         cTGCGCATGGCTGTGCCCTGACAGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTc                                             <  4:194618/149‑1 (MQ=255)                                                                                                                 ggCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGcc                                       >  8:263103/1‑147 (MQ=255)                                                                                                                       gCCCTGCCGGCACATTGCTGGCCCACGGCTGCGGCAAGCGAAGGCAAACTCCGCTTTCTTTCAGATGCTTAGGACCGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCccaggccag                               <  8:275132/149‑1 (MQ=255)                                                                                                                         ggcctcGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAggg                             <  6:134059/144‑1 (MQ=255)                                                                                                                         ccTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAggg                             <  7:298001/149‑1 (MQ=255)                                                                                                                               ggCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACt                         >  6:236093/1‑147 (MQ=255)                                                                                                                               cgcaggggactggcccacggctGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACTGa                       <  2:221225‑M2/127‑1 (MQ=255)                                                                                                                                        cTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACTGAGCCAGAAc               >  6:63439/1‑148 (MQ=255)                                                                                                                                             ccACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAggg                             <  1:264073/129‑1 (MQ=255)                                                                                                                                             ccACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGCACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAggg                             >  2:264073/1‑129 (MQ=255)                                                                                                                                                    tGCCGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACTGAGCCAGAACGATCGCCACACCt  >  6:74775‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTGGCCAGCTGTTCGGCCTGTATCAACGCCTTAACTATGGTGTTTCGGTGCTCTGGGTTGCCAGCCTGGCCTGGACAAGTCTGCGGAAGCCGAAGGCCAGTCCCCTGCGCATGGCTGTGCCCTGACGGCAAATTGCTGGCCCACGGCTGCGGAAAGCGAAGGCAAACTCCGTTTTCTTTCAGATGCTTAGGACAGCAACATGCGAGTACTTCTAGCAACGATGGCCGGCTGCCTGCTGGCCACCCTCGCTTTCGGCGCCCAGGCCAGGGCACTGAGCCAGAACGATCGCCACACCT  >  NC_002947/4096195‑4096490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.