New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5883926	54 (1.050)	4 (0.080)	4/242	NT	8.1%	intergenic (+21/+99)	PP_5157/PP_5158	hypothetical protein/hypothetical protein
	?	NC_002947	= 5884016	41 (0.850)					intergenic (+111/+9)	PP_5157/PP_5158	hypothetical protein/hypothetical protein

GTTCAAGGGTGTGCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCGTGGTTACCCCTTCCCCCGCCACTTTCACACCACTGAAGGTGCCATCATA  >  NC_002947/5883869‑5884162                                                                                                                                                    |                                                                                                                                                    gTTCAAGTGTGTGCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGg                                                                                                                                                    >  2:62385‑M2/1‑148 (MQ=255)  ttCAAGGGTGTGCAGGAGACTGCAGGTGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGAGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGg                                                                                                                                                    <  1:9420‑M2/148‑2 (MQ=255)     aaGGGTGTGCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCTGGTTCACCCGCGAAAGGGGCGgcac                                                                                                                                                 >  6:110944‑M2/1‑144 (MQ=255)        tgtgtgCAGGAGACTGCAGGCGTGCAGTAAGGTCTTGTTTGCAGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggt                                                                                                                                             >  8:203684‑M2/2‑141 (MQ=255)        ggTGTGCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggt                                                                                                                                             >  6:144021‑M2/1‑141 (MQ=255)           gtgCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCa                                                                                                                                          <  3:137361/149‑1 (MQ=255)              cAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAg                                                                                                                                        >  5:332628/1‑148 (MQ=255)                ggAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAg                                                                                                                                     <  5:124718/149‑1 (MQ=255)                 gagaCTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAg                                                                                                                                     >  7:114375/1‑148 (MQ=255)                  agaCTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGat                                                                                                                                   <  4:80814/149‑1 (MQ=255)                   gaCTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGata                                                                                                                                  >  7:64093/1‑149 (MQ=255)                    aCTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGatat                                                                                                                                 <  3:255214/149‑1 (MQ=255)                      tGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGatat‑at                                                                                                                              >  6:206266/1‑149 (MQ=255)                        cAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTa                                                                                                                            <  4:147957/149‑1 (MQ=255)                         aGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAg                                                                                                                           >  8:72666/1‑149 (MQ=255)                          ggCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGc                                                                                                                          <  8:64093/149‑1 (MQ=255)                                cAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGc                                                                                                                    >  6:198071/1‑149 (MQ=255)                                cAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGc                                                                                                                    >  5:53093/1‑149 (MQ=255)                                          ttGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGACGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGcc                                                                                                          >  5:110470/1‑149 (MQ=255)                                               tGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGt                                                                                                      <  7:189302/148‑1 (MQ=255)                                                 cAACCTGTGCTGGCCTCTTCGGGTGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCATCGACTTGTGTCCATCAGCTGCTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCa                                                                                                   <  3:35693/149‑1 (MQ=255)                                                 cAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCa                                                                                                   <  5:198071/149‑1 (MQ=255)                                                  aaCCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTc                                                                                                     <  5:57888/146‑1 (MQ=255)                                                  aaCCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTc                                                                                                     >  6:57888/1‑146 (MQ=255)                                                  aaCCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAg                                                                                                  >  1:35/1‑149 (MQ=255)                                                    ccTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGAGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGtt                                                                                                <  2:9420/149‑1 (MQ=255)                                                        tgCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCCCCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAg                                                                                            >  3:283197/1‑149 (MQ=255)                                                        tgCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAg                                                                                            <  5:206266/149‑1 (MQ=255)                                                           tGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggttgcaaacaagaccttactgcccgcctgcagtctcctgcacacccttgaacc                                                                                          <  5:171951‑M2/149‑60 (MQ=255)                                                             gCCTCTTCGCGGGTAAACCCGATCCTACGTCTGCCTAGGTCCAACCCTAGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGACAAAGCCCGATGCGCCTGGTCCAGTTCAAGCACGc                                                                                       >  8:123135/1‑149 (MQ=255)                                                              ccTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCt                                                                                      >  4:125879/1‑149 (MQ=255)                                                                    cgcgGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggttgcaaacaagaccttactgcccgcctgcagtctcctgcacacccttgaaccacttct                                                                                    >  6:171951‑M2/1‑81 (MQ=255)                                                                       gtgTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTg                                                                             <  8:114375/147‑1 (MQ=255)                                                                       gggTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCTACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTg                                                                             <  1:13116/149‑1 (MQ=255)                                                                        ggTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGc                                                                            <  6:92288/149‑1 (MQ=255)                                                                         gTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggttgcaaacaagaccttactgcccgcctgcagtctcctgcacacccttgaaccacttctgctcaagt                                                                            <  8:304206‑M2/149‑74 (MQ=255)                                                                         gTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCa                                                                           <  7:72666/149‑1 (MQ=255)                                                                             aCCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTcc                                                                       >  1:136406/1‑149 (MQ=255)                                                                               ccGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCATCGGGTTCACCCGGGTAAGGGCCGGCACATGTTCAAGCAGATATCATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAac                                                                                  <  1:73157/137‑1 (MQ=255)                                                                               ccGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAac                                                                                  >  2:73157/1‑136 (MQ=255)                                                                                  aTCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTcccgccc                                                                  <  6:332628/149‑1 (MQ=255)                                                                                              ccTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAgcg                                                      >  3:301225/1‑149 (MQ=255)                                                                                               cTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGgcacaggttgcaaacaagaccttactgcccgcctgcagtctcctgcacacccttgaaccacttctgctcaagttcggcagtccggccactgtctt                                                      >  7:304206‑M2/1‑54 (MQ=255)                                                                                               cTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAgcgc                                                     >  7:105623/1‑149 (MQ=255)                                                                                                  ggTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGcc                                                    <  3:125879/147‑1 (MQ=255)                                                                                                       aaCCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCGTGGTTa                                             >  6:113351/1‑149 (MQ=255)                                                                                                           cTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCGTGGTTAcccc                                         <  2:35/149‑1 (MQ=255)                                                                                                                            aGCGTGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCATATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCGTGGTTACCCCTTCCCCCGCAACTTTc                         <  7:123135/148‑1 (MQ=255)                                                                                                                            aGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCTGCGCCGTGGTTACCCCTTCCCCCGCCACTTTc                         <  4:301225/148‑1 (MQ=255)                                                                                                                             gCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCATGGTTACCCCTTCCCCCGCCACTTTca                        >  4:80902/1‑148 (MQ=255)                                                                                                                                 gTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCGCTCCCGCCCGCCGCAGCAGCGCCGTGGTTACCCCTTCCCCCGCCACTTTCAcacca                   <  6:53093/149‑1 (MQ=255)                                                                                                                                      cacgcgAAAGGGCAGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGACCGCTGCGACTGGTCCAGTTACAGCTCGCTGAACACCTGAACTCCCGCCCGCCGCAGCAGCGCCGTGGTTAACCCTTCCCCCGCCACTTTCACACCACTg                >  8:189102/3‑147 (MQ=255)                                                                                                                                                  ccGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCATGGTTACCCCTTCCCCCGCCACTTTCACACCACTGAAGGTGCCATCATa  <  3:80902/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTTCAAGGGTGTGCAGGAGACTGCAGGCGGGCAGTAAGGTCTTGTTTGCAACCTGTGCTGGCCTCTTCGCGGGTAAACCCGATCCTACGGCGGCCTAGGTCCAACCCTCGACGTGTGTCCATCAGCGGGTTCACCCGCGAAAGGGCCGGCACAGGTTCAAGCAGATAT‑ATTAGCCAAAGCCCGCTGCGCCTGGTCCAGTTCCAGCTCGCTGAACACCTGCACTCCCGCCCGCCGCAGCAGCGCCGTGGTTACCCCTTCCCCCGCCACTTTCACACCACTGAAGGTGCCATCATA  >  NC_002947/5883869‑5884162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.