New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1593948	64 (1.130)	6 (0.110)	4/250	NT	9.3%	intergenic (‑146/+155)	PP_1399/kgtP	hypothetical protein/alpha‑ketoglutarate permease
	?	NC_002947	= 1593994	55 (1.000)					intergenic (‑192/+109)	PP_1399/kgtP	hypothetical protein/alpha‑ketoglutarate permease

GTCGTTGCTCCAGGGGTTTGTGAGTTGTTTGTTTCTATGGGTTTAATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1593804‑1593948 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGGAT  <  NC_002947/1593994‑1593849                                                                                                                                                                                                                                                                                                     GTCGTTGCTCCAGGGGTTTGTGAGTTGTTTGTTTCTATGGGTTTAATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAATGGC                                                                                                                                                >  4:44308/1‑149         TCCAGGGGTTTGTGAGTTGTTTGTTTCTATGGGTTTAATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAA‑GGCTGGCAGAAC                                                                                                                                       >  1:113134/1‑149                                              ATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAA‑GGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGC                                                                                                  <  2:113134/149‑1                                              ATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATACTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAA‑GGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGC                                                                                                  <  3:153570/149‑1                                                CCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCG                                                                                                 <  3:44308/149‑1                                                                                                           CGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGC                                                                                               >  5:321840/1‑92                                                                                                           CGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGC                                                                                               <  6:321840/92‑1                                                                                                                                               CAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGGAT  >  4:50947/1‑149                                                                                                                                               CAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGGAT  <  5:113331/149‑1                                                                                                                                               CAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGG    <  5:75446/147‑1                                                                                                                                               CAATGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGG    <  6:192425/147‑1                                                                                                                                                                                                                                                                                                     GTCGTTGCTCCAGGGGTTTGTGAGTTGTTTGTTTCTATGGGTTTAATCCTACGCCGAATAATTTGATTAAAAAGCGCAAAAAATAGTGCTAAATAATCCATTTGTTCGATGTATTTGGGCGCGTATGTCGTGCTTCAGGCCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1593804‑1593948 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTGGCTGGCAGAACGTTGGCGCCCGCGCGAACGCTCCCAAGCCAGCCTTGCGGCCTGAAGCACGACATACGCGCCCAAATACATCGAACAAATGGATTATTTAGCACTATTTTTTGCGCTTTTTAATCAAATTATTCGGCGTAGGAT  <  NC_002947/1593994‑1593849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.