| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1747697 | 49 (0.870) | 4 (0.070) | 4/246 | NT | 7.4% | intergenic (‑189/+342) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 1747758 | 54 (1.000) | intergenic (‑250/+281) | PP_5473/PP_5474 | LuxR family transcriptional regulator/hypothetical protein | |||||
ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1747546‑1747697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC < NC_002947/1747758‑1747614 ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCT < 8:229703/148‑1 TTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGC > 5:78083/1‑137 TTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGC < 6:78083/137‑1 TTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGC < 4:337266/128‑1 TGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCA > 3:38972/1‑123 TGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCA < 4:38972/123‑1 CGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGG > 4:299877/1‑149 ATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCA < 3:299877/149‑1 AATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGAC > 7:38049/1‑148 CGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAAT < 8:38049/148‑1 CATCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC < 5:305264/148‑1 ATGCCGAAGCTTCTTGCGATTTCTTTGGTGGTAAGTCCTCGAGCAACCTCGAGAAGGCATTGCAATTCGCGAGGCGCCAGGCCTCGGCCGAGGTGGCCTATCCATGCGCCGATAGTGATCGTGTCCATTTTTGATCTCGGTGTGGGCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1747546‑1747697‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatCGGTCGTGACGTTCGCCCTCCCCTTGGTCCGGGAGGTAGACGGCAGCGAGCGTCACGACCAATGCAGCCCACACCGAGATCAAAAATGGACACGATCACTATCGGCGCATGGATAGGCCACCTCGGCCGAGGCCTGGCGCCTCGC < NC_002947/1747758‑1747614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |