New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1976704 =	67 (1.180)	4 (0.070)	4/248	NT	6.9%	coding (368/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1976760 =	44 (0.810)					coding (424/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase

GCGGTCAACCAGGACCAGCGCGGCGGGGTCGGTTTCGGCCAGCGGCGTGAGGATGACCTTGTGCCGGCGGAACAAGGTGGCATTGGACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1976855‑1976704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCC  >  NC_002947/1976760‑1976904                                                                                                                                                                                                                                                                                                            GCGGTCAACCAGGACCAGCGCGGCGGGGTCGGTTTCGGCCAGCGGCGTGAGGATGACCTTGTGCCGGCGGAACAAGGTGGCATTGGACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGC                                                                                                                                                       >  6:78841/1‑149    GTCAACCAGGACCAGCGCGGCGGGGTCGGTTTCGGCCAGCGGCGTGAGGATGACCTTGTGCCGGCGGAACAAGGTGGCATTGGACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGG                                                                                                                                                    <  5:350584/149‑1     TCAACCAGGACCAGCGCGGCGGGGTCGGTTTCGGCCAGCGGCGTGAGGATGACCTTGTGCCGGCGGAACAAGGTGGCATTGGACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGG                                                                                                                                                    >  5:223679/1‑148                                                                                      GACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGG                                                                                                                                                     <  1:337356/66‑1                                                                                      GACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGG                                                                                                                                                     >  2:337356/1‑66                                                                                                 CCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCC                                                                                        <  1:356022/116‑1                                                                                                 CCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCC                                                                                        >  2:356022/1‑116                                                                                                  CCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAACGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCATGGTTGACC                                                     >  2:235787/1‑149                                                                                                               AACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACATGGTCATCCTCACGCCGCTGGCCGAAACCGACCCCTGCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTG                                         <  1:235787/149‑1                                                                                                                                                     CGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCC  <  1:337318/149‑1                                                                                                                                                                                                                                                                                                            GCGGTCAACCAGGACCAGCGCGGCGGGGTCGGTTTCGGCCAGCGGCGTGAGGATGACCTTGTGCCGGCGGAACAAGGTGGCATTGGACGCCTCTACCCCGCTCTGCTCGGAACCGGCGATGGGGTGGCCCGGGACGAAGCGCGGCAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1976855‑1976704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCC  >  NC_002947/1976760‑1976904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.