New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1976704 =	67 (1.180)	4 (0.070)	4/248	NT	6.9%	coding (368/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1976760 =	44 (0.810)					coding (424/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase

CCTGGCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCCATGA  >  NC_002947/1976612‑1976908                                                                                                                                                      |                                                                                                                                                      ccTGGCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCgggg                                                                                                                                                       <  2:305559/149‑1 (MQ=255)  cTGGCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCgggg                                                                                                                                                       >  4:183475/1‑148 (MQ=255)    ggCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCgggg                                                                                                                                                       >  5:12537/1‑146 (MQ=255)     gCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTa                                                                                                                                                     <  7:31339/147‑1 (MQ=255)     gCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTa                                                                                                                                                     <  4:131820/147‑1 (MQ=255)       ccTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCCTCGCCGGTTCCGA‑GCAGAGCTGGGTAGAgg                                                                                                                                                 >  3:37273/1‑149 (MQ=255)           cTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTc                                                                                                                                             >  2:243114/1‑149 (MQ=255)              gACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCaa                                                                                                                                          <  3:183475/149‑1 (MQ=255)               aCCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAAt                                                                                                                                         <  1:294369/149‑1 (MQ=255)               aCCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAAt                                                                                                                                         <  4:42358/149‑1 (MQ=255)                          gCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGtt                                                                                                                              >  6:223679/1‑149 (MQ=255)                              tcatcaCCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTccgc                                                                                                                          >  5:59299/1‑149 (MQ=255)                                 tcaCCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTg                                                                                                                                <  6:238144/140‑1 (MQ=255)                                 tcaCCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTg                                                                                                                                >  5:238144/1‑140 (MQ=255)                                  caCCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTccgcc                                                                                                                         >  5:88123/1‑146 (MQ=255)                                  caCCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTccgcc                                                                                                                         <  6:88123/146‑1 (MQ=255)                                    ccGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGca                                                                                                                     >  5:78841/1‑148 (MQ=255)                                     cGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTACAGGCGGCCAAAGCAACCGTGTTCCGCCGGccca                                                                                                                   >  4:203047/1‑149 (MQ=255)                                            ggCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGACGCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTc                                                                                                              <  1:89653/148‑1 (MQ=255)                                             gCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATc                                                                                                           >  2:189389/1‑149 (MQ=255)                                             gCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATc                                                                                                           <  2:185161/149‑1 (MQ=255)                                                gcgcCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCt                                                                                                         >  5:155057/1‑148 (MQ=255)                                                  gcCTAGGGCAACGGCGTGCGTGAGGCGCGTGCCGTCTTCGGTGAGCGCCTGCCGCGCTTCGTCCCGGGCCAGCGCATCGCCGGTTCCGA‑GCAGTGCGGGGTATAGGCGTCCAATTCCAGCTTGTTCCTCCGGCACAAGGTCATCCTCAc                                                                                                      <  4:203046/149‑1 (MQ=255)                                                  gcCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCAc                                                                                                      <  6:155057/149‑1 (MQ=255)                                                  gcCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCAc                                                                                                      >  2:195560/1‑149 (MQ=255)                                                    cAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCAcgc                                                                                                    <  3:307532/149‑1 (MQ=255)                                                      aGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCAcgccg                                                                                                  >  3:274554/1‑149 (MQ=255)                                                        ggCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCt                                                                                                <  1:195560/149‑1 (MQ=255)                                                                 gtgcgtgAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGaaa                                                                                        <  5:151669/148‑1 (MQ=255)                                                                 gtgcgtgAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGaaa                                                                                        <  4:338915/148‑1 (MQ=255)                                                                    cgtgAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGa                                                                                    <  1:243114/149‑1 (MQ=255)                                                                     gtgAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGAc                                                                                   <  6:231409/149‑1 (MQ=255)                                                                         ggCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCcc‑g                                                                              >  4:268450/1‑149 (MQ=255)                                                                                gCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTcc                                                                                                                                            >  6:369820/1‑81 (MQ=255)                                                                                gCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTcc                                                                                                                                            <  5:369820/81‑1 (MQ=255)                                                                                         ggTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTgg                                                               <  8:184352/148‑1 (MQ=255)                                                                                           tGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGC‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGtt                                                             >  5:274316/1‑148 (MQ=255)                                                                                             CCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGa                                                           >  5:223679‑M1/1‑148 (MQ=255)                                                                                             CCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGAc                                                          <  5:350584‑M1/149‑1 (MQ=255)                                                                                              cccgctctgctcggaaccggcgatggggtggcccgggacgaagcgcggcaggcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGcc                                                                                            <  1:356022‑M2/60‑1 (MQ=255)                                                                                              cccgctctgctcggaaccggcgatggggtggcccgggacgaagcgcggcaggcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGcc                                                                                            >  2:356022‑M2/57‑116 (MQ=255)                                                                                              CCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTc                                                                                                                                             <  1:337356‑M1/66‑1 (MQ=255)                                                                                              CCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTc                                                                                                                                             >  2:337356‑M1/1‑66 (MQ=255)                                                                                               ccgctctgctcggaaccggcgatggggtggcccgggacgaagcgcggcaggcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAACGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCATGGTTGAcc                                                         >  2:235787‑M2/56‑149 (MQ=255)                                                                                                GCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGc                                                       >  6:78841‑M1/1‑149 (MQ=255)                                                                                                    gCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCtgt                                                   >  3:248993/1‑149 (MQ=255)                                                                                                     ccGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCtgt                                                   <  4:274554/148‑1 (MQ=255)                                                                                                         gcTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGt                                              <  5:323681/149‑1 (MQ=255)                                                                                                          cTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGACCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCt                                                     <  7:66950/141‑1 (MQ=255)                                                                                                          cTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGACCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCt                                                     >  8:66950/1‑141 (MQ=255)                                                                                                            aaccggcgatggggtggcccgggacgaagcgcggcaggcgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACATGGTCATCCTCACGCCGCTGGCCGAAACCGACCCCTGCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTg                                             <  1:235787‑M2/107‑1 (MQ=255)                                                                                                              ggcccGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCt                                         <  3:203047/147‑1 (MQ=255)                                                                                                               tCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTg                                        >  2:337318/1‑149 (MQ=255)                                                                                                                 ccGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTgg                                       <  1:189389/148‑1 (MQ=255)                                                                                                                       cACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGa                                <  3:320056/149‑1 (MQ=255)                                                                                                                       cACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGa                                >  4:320056/1‑149 (MQ=255)                                                                                                                                   ggTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCt                                         >  7:38802/1‑128 (MQ=255)                                                                                                                                   ggTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCt                                         <  8:38802/128‑1 (MQ=255)                                                                                                                                                  cgggGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGcc      <  1:337318‑M2/145‑1 (MQ=255)                                                                                                                                                      gTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCtgtg                                                  <  3:341418/101‑1 (MQ=255)                                                                                                                                                      gTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCtgtg                                                  >  4:341418/1‑101 (MQ=255)                                                                                                                                                      gTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCCATGa  <  4:164600/149‑1 (MQ=255)                                                                                                                                                      gTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGAACGCCGATGTGGAGCACATGTCGGTCGAGCGCCAGGa  >  8:105137/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CCTGGCCCTGCTCGACCTGGGTGATGCAATCATCACCGACGTCGGCAGCGCCAAGGGCAACGTCGTGCGTGAGGCGCGTGCCGTCTTCGGTGCCCGCCTGCCGCGCTTCGTCCCGGGCCACCCCATCGCCGGTTCCGA‑GCAGAGCGGGGTAGAGGCGTCCAATGCCACCTTGTTCCGCCGGCACAAGGTCATCCTCACGCCGCTGGCCGAAACCGACCCC‑GCCGCGCTGGTCCTGGTTGACCGCCTGTGGCGTGCGCTGGACGCCGATGTGGAGCACATGTCGGTCGAGCGCCATGA  >  NC_002947/1976612‑1976908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.