New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2946810	39 (0.690)	3 (0.050)	3/250	NT	6.8%	coding (712/1755 nt)	yijP	phosphoethanolamine transferase CptA
	?	NC_002947	= 2946832	45 (0.820)					coding (690/1755 nt)	yijP	phosphoethanolamine transferase CptA

TCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2946693‑2946810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgCGACAGCAGTGGTACTGCGCCACGCACCCTGGTATTGGTGCTCGGCGAGTCGACCACCCGCGAGCACATGCACCTGTATGGCTATGACCGCGACACCACGCCC  <  NC_002947/2946832‑2946730                                                                                                                                                                                                                               TCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGCGACAGCAGTGGTACTGCGCCACGCACCCTG                                                                          <  8:180836/149‑1                    GGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGCGACAGCAGTGGTACTGCGCCACGCACC                                                                             >  5:364427/1‑127                    GGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGCGACAGCAGTGGTACTGCGCCACGCACC                                                                             <  6:364427/127‑1                                                                                                                   TGCGCGACAGCAGTGGTACTGCGCCACGCACCCTGGTATTGGTGCTCGGCGAGTCGACCACCCGCGAGCACATGCACCTGTATGGCTATGACCGCGACACCACGCCC  >  7:280062/1‑107                                                                                                                   TGCGCGACAGCAGTGGTACTGCGCCACGCACCCTGGTATTGGTGCTCGGCGAGTCGACCACCCGCGAGCACATGCACCTGTATGGCTATGACCGCGACACCACGCCC  <  8:280062/107‑1                                                                                                                                                                                                                               TCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2946693‑2946810 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgCGACAGCAGTGGTACTGCGCCACGCACCCTGGTATTGGTGCTCGGCGAGTCGACCACCCGCGAGCACATGCACCTGTATGGCTATGACCGCGACACCACGCCC  <  NC_002947/2946832‑2946730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.