New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2946810	39 (0.690)	3 (0.050)	3/250	NT	6.8%	coding (712/1755 nt)	yijP	phosphoethanolamine transferase CptA
	?	NC_002947	= 2946832	45 (0.820)					coding (690/1755 nt)	yijP	phosphoethanolamine transferase CptA

GGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGCTGCTGCACTTTTTCGAG  >  NC_002947/2946684‑2946972                                                                                                                                                     |                                                                                                                                                ggAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTcg                                                                                                                                                 >  2:286396/1‑149 (MQ=255)                             ggcCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCgg                                                                                                                    >  7:178907/1‑149 (MQ=255)                                  gcgcGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTc                                                                                                               >  2:32225/1‑149 (MQ=255)                                     cgTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCGGT‑GCGGCATTCTgg                                                                                                            <  1:206615/149‑1 (MQ=255)                                     cgTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTgg                                                                                                            <  2:359813/149‑1 (MQ=255)                                        cGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGc                                                                                                          >  2:347763/1‑148 (MQ=255)                                               gggCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgca                                                                                                                                             <  8:280062‑M2/107‑5 (MQ=255)                                               gggCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgca                                                                                                                                             >  7:280062‑M2/1‑103 (MQ=255)                                                   gtggtgTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTg                                                                                              <  5:34587/149‑1 (MQ=255)                                                   gtggtgTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTg                                                                                              >  8:278149/1‑149 (MQ=255)                                                        gtCGCGGTCATAGCCATACACGTGCATGTGCTCGCGGGGGGTCGACGCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGTAGCGGCATTCTGGGCAAGCAGTTTCTGCAtg                                                                                          <  1:32225/149‑1 (MQ=255)                                                           gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGc                                                                                             >  4:116399/1‑142 (MQ=255)                                                           gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGc                                                                                             <  3:116399/142‑1 (MQ=255)                                                           gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgttgt                                                                                      >  1:130818/1‑149 (MQ=255)                                                                 aTAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑tt                                                                              <  7:56024/149‑1 (MQ=255)                                                                 aTAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑tt                                                                              <  1:347763/149‑1 (MQ=255)                                                                    gCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgtt                                                                                        <  3:333737/138‑1 (MQ=255)                                                                    gCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgtt                                                                                        >  4:333737/1‑138 (MQ=255)                                                                      cATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTgg                                                                         >  5:46089/1‑149 (MQ=255)                                                                         aCAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCgg                                                                      >  7:244298/1‑149 (MQ=255)                                                                             gTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACt                                                                  >  1:209553/1‑149 (MQ=255)                                                                                cATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGtt                                                               >  8:113351/1‑149 (MQ=255)                                                                                 aTGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTg                                                              >  3:86411/1‑149 (MQ=255)                                                                                    tgCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTa                                                           <  4:295617/149‑1 (MQ=255)                                                                                    tgCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTa                                                           <  8:58376/149‑1 (MQ=255)                                                                                      cTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGc                                                         >  6:23583/1‑149 (MQ=255)                                                                                         gcgGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGcc                                                        <  8:12455/147‑1 (MQ=255)                                                                                          cgGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGAc                                                     <  4:86411/149‑1 (MQ=255)                                                                                            ggtggtCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCa                                                   <  8:244298/149‑1 (MQ=255)                                                                                                 tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                                              <  8:178907/149‑1 (MQ=255)                                                                                                 tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                                              >  4:328171/1‑149 (MQ=255)                                                                                                 tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                                              >  2:89533/1‑149 (MQ=255)                                                                                                 tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                                              <  2:130818/149‑1 (MQ=255)                                                                                                          cGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAgg                                      >  8:40136/1‑148 (MQ=255)                                                                                                              cACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACgg                                 >  3:72489/1‑149 (MQ=255)                                                                                                               aCCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGc                                <  5:23583/149‑1 (MQ=255)                                                                                                                    tACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAATCAGTTTCTGCATGTTGTCCAGCCTTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCgg                             <  1:89533/149‑1 (MQ=255)                                                                                                                       cAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggccgccagcgacaagagcctga                           <  8:180836‑M2/149‑119 (MQ=255)                                                                                                                       cAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCa                        <  2:209553/149‑1 (MQ=255)                                                                                                                          ggTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggcc                                              >  5:364427‑M2/1‑28 (MQ=255)                                                                                                                          ggTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggcc                                              <  6:364427‑M2/127‑100 (MQ=255)                                                                                                                               gTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCaa                                               <  4:52636/118‑1 (MQ=255)                                                                                                                               gTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCaa                                               >  3:52636/1‑118 (MQ=255)                                                                                                                                tGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCgctgct               >  7:206857/1‑149 (MQ=255)                                                                                                                                tGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCAAG‑‑TTGCTGGCGGTACTGTTGGTCTCCGCCCAGCAACTGCCAAGGTACTGCCGGTTCCATTCtctgct               >  3:11185/1‑149 (MQ=255)                                                                                                                                 ggCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGctgctg              >  2:161109/1‑149 (MQ=255)                                                                                                                                   cgcAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCaa                                        <  6:284827/121‑1 (MQ=255)                                                                                                                                   cgcAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCaa                                        >  5:284827/1‑121 (MQ=255)                                                                                                                                       gTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGCTGCTGCACttt        <  6:46089/149‑1 (MQ=255)                                                                                                                                          ccACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGCTGCTGCACTTTTTc     >  3:140335/1‑149 (MQ=255)                                                                                                                                             ctgctgTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGCTGCTGCACTTTTTCGAg  <  7:247545/149‑1 (MQ=255)                                                                                                                                                 tgTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTg                                                                 >  5:171268/1‑82 (MQ=255)                                                                                                                                                 tgTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTg                                                                 <  6:171268/82‑1 (MQ=255)                                                                                                                                                 tgTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTg                                                              >  6:56290/1‑85 (MQ=255)                                                                                                                                                 tgTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTg                                                              <  5:56290/85‑1 (MQ=255)                                                                                                                                                  gTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACt                                             <  2:205054/101‑1 (MQ=255)                                                                                                                                                  gTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACt                                             >  1:205054/1‑101 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCATTCGCTGCTGCACTTTTTCGAG  >  NC_002947/2946684‑2946972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.