New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2946810	39 (0.690)	3 (0.050)	3/250	NT	6.8%	coding (712/1755 nt)	yijP	phosphoethanolamine transferase CptA
	?	NC_002947	= 2946832	45 (0.820)					coding (690/1755 nt)	yijP	phosphoethanolamine transferase CptA

GGCGCGGCGATACCACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCA  >  NC_002947/2946663‑2946950                                                                                                                                                    |                                                                                                                                                ggCGCGGCGATACCACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGt                                                                                                                                                <  6:366507/149‑1 (MQ=255)       gcgATACCACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCa                                                                                                                                          <  7:81436/149‑1 (MQ=255)              cACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCAc                                                                                                                                   >  1:359813/1‑149 (MQ=255)              cACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCAc                                                                                                                                   >  2:206615/1‑149 (MQ=255)                      ggAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTcg                                                                                                                           >  2:286396/1‑149 (MQ=255)                               tCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGcgacagcagtggtactgcgccacgcaccctg                                                                                                                  <  8:180836‑M1/149‑32 (MQ=255)                                                  ggcCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGcgacagcagtggtactgcgccacgcacc                                                                                                                     <  6:364427‑M1/127‑29 (MQ=255)                                                  ggcCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGcgacagcagtggtactgcgccacgcacc                                                                                                                     >  5:364427‑M1/1‑99 (MQ=255)                                                  ggcCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCgg                                                                                              >  7:178907/1‑149 (MQ=255)                                                       gcgcGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTc                                                                                         >  2:32225/1‑149 (MQ=255)                                                          cgTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCGGT‑GCGGCATTCTgg                                                                                      <  1:206615/149‑1 (MQ=255)                                                          cgTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTgg                                                                                      <  2:359813/149‑1 (MQ=255)                                                             cGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGc                                                                                    >  2:347763/1‑148 (MQ=255)                                                                    gggCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgca                                                                                                                       <  8:280062‑M2/107‑5 (MQ=255)                                                                    gggCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgca                                                                                                                       >  7:280062‑M2/1‑103 (MQ=255)                                                                        gtggtgTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTg                                                                        >  8:278149/1‑149 (MQ=255)                                                                        gtggtgTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTg                                                                        <  5:34587/149‑1 (MQ=255)                                                                             gtCGCGGTCATAGCCATACACGTGCATGTGCTCGCGGGGGGTCGACGCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGTAGCGGCATTCTGGGCAAGCAGTTTCTGCAtg                                                                    <  1:32225/149‑1 (MQ=255)                                                                                gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGc                                                                       <  3:116399/142‑1 (MQ=255)                                                                                gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGc                                                                       >  4:116399/1‑142 (MQ=255)                                                                                gcgGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgttgt                                                                >  1:130818/1‑149 (MQ=255)                                                                                      aTAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑tt                                                        <  7:56024/149‑1 (MQ=255)                                                                                      aTAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑tt                                                        <  1:347763/149‑1 (MQ=255)                                                                                         gCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgtt                                                                  >  4:333737/1‑138 (MQ=255)                                                                                         gCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCAtgtt                                                                  <  3:333737/138‑1 (MQ=255)                                                                                           cATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTgg                                                   >  5:46089/1‑149 (MQ=255)                                                                                              aCAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCgg                                                >  7:244298/1‑149 (MQ=255)                                                                                                  gTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACt                                            >  1:209553/1‑149 (MQ=255)                                                                                                     cATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGtt                                         >  8:113351/1‑149 (MQ=255)                                                                                                      aTGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTg                                        >  3:86411/1‑149 (MQ=255)                                                                                                         tgCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTa                                     <  8:58376/149‑1 (MQ=255)                                                                                                         tgCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTa                                     <  4:295617/149‑1 (MQ=255)                                                                                                           cTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGc                                   >  6:23583/1‑149 (MQ=255)                                                                                                              gcgGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGcc                                  <  8:12455/147‑1 (MQ=255)                                                                                                               cgGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGAc                               <  4:86411/149‑1 (MQ=255)                                                                                                                 ggtggtCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCa                             <  8:244298/149‑1 (MQ=255)                                                                                                                      tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                        <  2:130818/149‑1 (MQ=255)                                                                                                                      tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                        >  4:328171/1‑149 (MQ=255)                                                                                                                      tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                        <  8:178907/149‑1 (MQ=255)                                                                                                                      tCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAAc                        >  2:89533/1‑149 (MQ=255)                                                                                                                               cGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAgg                >  8:40136/1‑148 (MQ=255)                                                                                                                                   cACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACgg           >  3:72489/1‑149 (MQ=255)                                                                                                                                    aCCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGc          <  5:23583/149‑1 (MQ=255)                                                                                                                                         tACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAATCAGTTTCTGCATGTTGTCCAGCCTTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCgg       <  1:89533/149‑1 (MQ=255)                                                                                                                                            cAGGGTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggccgccagcgacaagagcctga     <  8:180836‑M2/149‑119 (MQ=255)                                                                                                                                            cAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCa  <  2:209553/149‑1 (MQ=255)                                                                                                                                               ggTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggcc                        >  5:364427‑M2/1‑28 (MQ=255)                                                                                                                                               ggTGCGTGGCGCAGTACCACTGCTGTCGcgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgcccaacctcgacgcgctggcc                        <  6:364427‑M2/127‑100 (MQ=255)                                                                                                                                                 tGCGcgacagcagtggtactgcgccacgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgccc                                          <  8:280062‑M1/107‑104 (MQ=255)                                                                                                                                                 tGCGcgacagcagtggtactgcgccacgcaccctggtattggtgctcggcgagtcgaccacccgcgagcacatgcacctgtatggctatgaccgcgacaccacgccc                                          >  7:280062‑M1/1‑4 (MQ=255)                                                                                                                                                    gTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCaa                         >  3:52636/1‑118 (MQ=255)                                                                                                                                                    gTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCaa                         <  4:52636/118‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                GGCGCGGCGATACCACGTCGCGGAACACGGTCAGGCTCTTGTCGCTGGCGGCCAGCGCGTCGAGGTTGGGCGTGGTGTCGCGGTCATAGCCATACAGGTGCATGTGCTCGCGGGTGGTCGACTCGCCGAGCACCAATACCAGGGTGCGTGGCGCAGTACCACTGCTGTCGCGCAGGTTCTGCAGCGGTGGCAGT‑GCGGCATTCTGGGCAAGCAGTTTCTGCATGTTGTCCAG‑‑TTGCTGGCGGTACTGTTGGTAGCCGACCAGCAACTGCCAAGGTACGGCCGGTTCCA  >  NC_002947/2946663‑2946950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.