| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2982409 = | 50 (0.880) | 3 (0.060) | 3/246 | NT | 5.8% | coding (770/810 nt) | PP_2608 | shikimate dehydrogenase family protein |
| ? | NC_002947 | 2982442 = | 49 (0.910) | coding (737/810 nt) | PP_2608 | shikimate dehydrogenase family protein | |||||
GTTGTCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2982561‑2982409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC > NC_002947/2982442‑2982586 GTTGTCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGG < 3:270414/149‑1GTTGTCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGG > 8:245988/1‑149 TTGTCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGGG > 2:302119/1‑149 GACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGC > 5:244206/1‑149 TGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCT < 3:331900/120‑1 TGGCCCGGAAATGGCCTTCGCCCAACTGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCT > 4:331900/1‑120 GGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCGGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCG > 5:143901/1‑119 GGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCGGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCG < 6:143901/119‑1 GCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC > 4:283077/1‑149 GTTGTCCGCCGCCCTGCTGGCTACCCTGCAGCCAGACACCCTGGTCGCCGACGTGGTCACCTCACCCGAGATCACCCCGCTGCTGAACCGCGCGCGGCAAGTAGGTTGCAGGATCCAGACTGGCCCGGAAATGGCCTTCGCCCAACTGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2982561‑2982409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGC > NC_002947/2982442‑2982586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |