New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4218215	62 (1.100)	3 (0.060)	3/242	NT	5.1%	coding (1082/1500 nt)	PP_3698	hypothetical protein
	?	NC_002947	= 4218256	53 (1.000)					coding (1041/1500 nt)	PP_3698	hypothetical protein

GCGGTCGAGTCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4218067‑4218215 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTAGAG  <  NC_002947/4218256‑4218112                                                                                                                                                                                                                                                                                                        GCGGTCGAGTCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCCTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCA                                                                                                                                                   >  8:9784/1‑149                                                      CAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTG                                                                                              <  2:330333/149‑1                                                                       AGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGG                                                                                            <  7:323374/134‑1                                                                       AGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGGTGGTATGGCGCGGGTTGGG                                                                                            >  8:323374/1‑134                                                                                                                                                  GCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGC                   >  3:333686/1‑132                                                                                                                                                  GCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGC                   <  4:333686/132‑1                                                                                                                                                  GCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCAGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTAGAG  >  2:271685/1‑149                                                                                                                                                   CCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTAGAG  >  6:317793/1‑148                                                                                                                                                    CAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTAGAG  >  6:47667/1‑147                                                                                                                                                    CAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGAC                        <  1:348095/125‑1                                                                                                                                                    CAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGAC                        >  2:348095/1‑125                                                                                                                                                                                                                                                                                                        GCGGTCGAGTCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4218067‑4218215 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTAGAG  <  NC_002947/4218256‑4218112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.