New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4249662 =	43 (0.760)	4 (0.070)	3/246	NT	10.3%	coding (365/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	4249723 =	29 (0.540)					coding (304/2118 nt)	PP_3724	acyl‑CoA synthetase

TCGCCACCAACCGTGAGCTGACCCTGCAGTGCGTTGCCGAGCTGGCTGCACGTGGTGCCGGTGGCGCCATCTGCTATGCCTCGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4249809‑4249662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCTT  >  NC_002947/4249723‑4249869                                                                                                                                                                                                                                                                                                           TCGCCACCAACCGTGAGCTGACCCTGCAGTGCGTTGCCGAGCTGGCTGCACGTGGTGCCGGTGGCGCCATCTGCTATGCCTCGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAA                                                                                                                                                     >  3:233016/1‑148                                          CTGGCTGCACGTGGTGCCGGTGGCGCCATCTGCTATGCCTCGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAA                                                                                                                                                     >  3:263740/1‑107                                          CTGGCTGCACGTGGTGCCGGTGGCGCCATCTGCTATGCCTCGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAA                                                                                                                                                     <  4:263740/107‑1                                                                                  CGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGT                                                                   >  2:137541/1‑149                                                                                  CGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGT                                                                   >  4:142435/1‑149                                                                                   GGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGTGACGCCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGG                                                                    >  1:279143/1‑149                                                                                                              CTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAG                                       <  1:137541/149‑1                                                                                                                                                 CGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGTGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGAT       <  1:73538/148‑1                                                                                                                                                     AAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCTT  >  5:327095/1‑149                                                                                                                                                                                                                                                                                                           TCGCCACCAACCGTGAGCTGACCCTGCAGTGCGTTGCCGAGCTGGCTGCACGTGGTGCCGGTGGCGCCATCTGCTATGCCTCGGGCTTTGCCGAAAGCGGTGAGGAGGGCTGCCAGTTGCAGCAACGCCTGCTCGACGT‑‑CGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4249809‑4249662 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCTT  >  NC_002947/4249723‑4249869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.