New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4249662 =	43 (0.760)	4 (0.070)	3/246	NT	10.3%	coding (365/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	4249723 =	29 (0.540)					coding (304/2118 nt)	PP_3724	acyl‑CoA synthetase

GCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCTT  >  NC_002947/4249576‑4249869                                                                                                                                                      |                                                                                                                                                   gCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAg                                                                                                                                                   >  2:233179/1‑149 (MQ=255)  cTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGc                                                                                                                                                  <  1:81305/149‑1 (MQ=255)     accaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCg                                                                                                                                               >  4:142435‑M1/83‑149 (MQ=255)     accaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCg                                                                                                                                               >  2:137541‑M1/83‑149 (MQ=255)      ccaccaTGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                                                                              <  6:146425/149‑1 (MQ=255)      ccaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCGTCACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGccc                                                                                                                                                >  1:279143‑M1/82‑149 (MQ=255)           aTGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCa                                                                                                                                          >  4:292542/1‑148 (MQ=255)              cgcCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGc                                                                                                                                      <  5:79454/149‑1 (MQ=255)                   ccGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATg                                                                                                                                 <  3:327248/149‑1 (MQ=255)                    cGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATgg                                                                                                                                >  4:233016/1‑149 (MQ=255)                             ggcggcACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                                                                              <  4:141283/126‑1 (MQ=255)                             ggcggcACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                                                                              >  3:141283/1‑126 (MQ=255)                                        gCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGca                                                                                                            <  3:19028/149‑1 (MQ=255)                                         cAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGca                                                                                                            <  1:233179/148‑1 (MQ=255)                                            gTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAg                                                                                                                                             >  1:244271/1‑112 (MQ=255)                                            gTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAg                                                                                                                                             <  2:244271/112‑1 (MQ=255)                                                  gAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCgg                                                                                                  <  3:100227/149‑1 (MQ=255)                                                           aTAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACt                                                                                         >  2:236564/1‑149 (MQ=255)                                                           aTAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACt                                                                                         >  2:8862/1‑149 (MQ=255)                                                             aGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTg                                                                                        >  2:204841/1‑148 (MQ=255)                                                                aGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAgg                                                                                    <  6:265163/149‑1 (MQ=255)                                                                aGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAgg                                                                                    <  5:340029/149‑1 (MQ=255)                                                                         cGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCa                                                                           <  5:117063/149‑1 (MQ=255)                                                                           aGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACg                                                                         <  1:204841/149‑1 (MQ=255)                                                                                  gggctttgccgaaagcggtgaggagggctgccagttgcagcaacgcctgctcgacgtgacgccggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTtgg                                                                    >  1:279143‑M2/69‑149 (MQ=255)                                                                                   cgggctttgccgaaagcggtgaggagggctgccagttgcagcaacgcctgctcgacgtcgccggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTtggt                                                                   >  2:137541‑M2/68‑149 (MQ=255)                                                                                   cgggctttgccgaaagcggtgaggagggctgccagttgcagcaacgcctgctcgacgtcgccggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTtggt                                                                   >  4:142435‑M2/68‑149 (MQ=255)                                                                                       TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGcagccag                                                                                                       <  4:263740‑M1/107‑1 (MQ=255)                                                                                       TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGcagccag                                                                                                       >  3:263740‑M1/1‑107 (MQ=255)                                                                                       TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGa                                                              >  3:233016‑M1/1‑148 (MQ=255)                                                                                                     tCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTc                                                 <  3:292542/149‑1 (MQ=255)                                                                                                        aGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCgg                                              >  1:166070/1‑149 (MQ=255)                                                                                                               ctgccagttgcagcaacgcctgctcgacgtcgccggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAg                                       <  1:137541‑M2/110‑1 (MQ=255)                                                                                                                   ctgcAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGc                                    <  1:8862/148‑1 (MQ=255)                                                                                                                     gcAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGTGGCGTAGGGCAAg                                 >  1:304654/1‑149 (MQ=255)                                                                                                                     gcAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAg                                 >  3:306197/1‑149 (MQ=255)                                                                                                                              aGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCAcc                        >  4:279065/1‑149 (MQ=255)                                                                                                                                  ctcctcACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCggg                    <  4:306197/149‑1 (MQ=255)                                                                                                                                    cctcACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGc                   >  6:183050/1‑148 (MQ=255)                                                                                                                                      tcACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCAc                >  2:11751/1‑149 (MQ=255)                                                                                                                                          cGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAg            >  6:217858/1‑149 (MQ=255)                                                                                                                                            cTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAggg          <  1:236564/149‑1 (MQ=255)                                                                                                                                            cTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAggg          >  7:209493/1‑149 (MQ=255)                                                                                                                                             tttCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAggg          >  2:73538/1‑148 (MQ=255)                                                                                                                                                cggcaaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGTGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGAt       <  1:73538‑M2/142‑1 (MQ=255)                                                                                                                                                    aaAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCtt  >  5:327095‑M2/3‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGATGAACACCGCGTCCGGGGCGTAGGGCAAGTCGGCCACCCGGGCCACGCAGGGGATGCCTT  >  NC_002947/4249576‑4249869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.