New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4249662 =	43 (0.760)	4 (0.070)	3/246	NT	10.3%	coding (365/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	4249723 =	29 (0.540)					coding (304/2118 nt)	PP_3724	acyl‑CoA synthetase

ATGGACAGGTTGTAGGCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGA  >  NC_002947/4249515‑4249809                                                                                                                                                    |                                                                                                                                                      aaggcatcccctgcgtggcccgggtggccgacttgccctacgccccggacgcggtgttcatcgccaccaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggcttt                                                                                                                                                      >  5:327095‑M1/148‑149 (MQ=255)      atcccctgcgtggcccgggtggccgacttgccctacgccccggacacggtgttcatcgccaccaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCg                                                                                                                                                  <  1:73538‑M1/6‑1 (MQ=255)         gTTGTAGGCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑a                                                                                                                                            >  6:340029/1‑149 (MQ=255)         gTTGTAGGCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCAGAGCAAGGCCATGTTGCCGGCG‑‑a                                                                                                                                            >  3:1476/1‑149 (MQ=255)             tAGGCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTc                                                                                                                                        <  6:138921/149‑1 (MQ=255)               ggCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGa                                                                                                                                      <  1:46560/149‑1 (MQ=255)                gCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAg                                                                                                                                     <  4:1476/149‑1 (MQ=255)                   aaGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTCGCCGGCG‑‑ACGTCGAGCAg                                                                                                                                  <  1:345272/149‑1 (MQ=255)                         ccACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTtg                                                                                                                            <  5:250697/149‑1 (MQ=255)                           aCTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTtgct                                                                                                                          >  1:141285/1‑149 (MQ=255)                                  gTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTg                                                                                                                   >  7:284905/1‑149 (MQ=255)                                  gTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTg                                                                                                                   >  4:327248/1‑149 (MQ=255)                                   tGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTgg                                                                                                                  <  3:64033/149‑1 (MQ=255)                                      ctacgccccggacgcggtgttcatcgccaccaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAg                                                                                                               <  1:137541‑M1/39‑1 (MQ=255)                                       gATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGc                                                                                                              >  2:81305/1‑149 (MQ=255)                                           gCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCcctc                                                                                                          <  3:99286/149‑1 (MQ=255)                                           gCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGACACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCcctc                                                                                                          <  8:284905/149‑1 (MQ=255)                                            ccACACCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGAAGAGCAAGGACATGTTGACGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGTCAGCactc                                                                                                          >  4:14728/1‑148 (MQ=255)                                                 cccTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCAcc                                                                                                    >  1:321299/1‑149 (MQ=255)                                                         cACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCgg                                                                                            >  6:79454/1‑149 (MQ=255)                                                         cACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCg                                                                                             <  2:321299/148‑1 (MQ=255)                                                          aCTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCgg                                                                                            >  4:19028/1‑148 (MQ=255)                                                           cTTGCTGGCCACCATGCGCCCCCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGc                                                                                           >  2:223998/1‑148 (MQ=255)                                                              gCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAg                                                                                       >  2:233179/1‑149 (MQ=255)                                                               cTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGc                                                                                      <  1:81305/149‑1 (MQ=255)                                                                  accaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCg                                                                                   >  2:137541‑M1/83‑149 (MQ=255)                                                                  accaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCg                                                                                   >  4:142435‑M1/83‑149 (MQ=255)                                                                   ccaccaTGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                  <  6:146425/149‑1 (MQ=255)                                                                   ccaaccgtgagctgaccctgcagtgcgttgccgagctggctgcacgtggtgccggtggcgccatctgctatgcctcgggctTTGCCGGCGTCACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGccc                                                                                    >  1:279143‑M1/82‑149 (MQ=255)                                                                        aTGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCa                                                                              >  4:292542/1‑148 (MQ=255)                                                                           cgcCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGc                                                                          <  5:79454/149‑1 (MQ=255)                                                                                ccGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCa                                                                                                                >  7:210450/1‑106 (MQ=255)                                                                                ccGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCa                                                                                                                <  8:210450/106‑1 (MQ=255)                                                                                ccGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATg                                                                     <  3:327248/149‑1 (MQ=255)                                                                                 cGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATgg                                                                    >  4:233016/1‑149 (MQ=255)                                                                                          ggcggcACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                  <  4:141283/126‑1 (MQ=255)                                                                                          ggcggcACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGa                                                                                  >  3:141283/1‑126 (MQ=255)                                                                                                     gCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGca                                                <  3:19028/149‑1 (MQ=255)                                                                                                      cAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGca                                                <  1:233179/148‑1 (MQ=255)                                                                                                         gTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAg                                                                                 >  1:244271/1‑112 (MQ=255)                                                                                                         gTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAg                                                                                 <  2:244271/112‑1 (MQ=255)                                                                                                               gAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCgg                                      <  3:100227/149‑1 (MQ=255)                                                                                                                        aTAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACt                             >  2:236564/1‑149 (MQ=255)                                                                                                                        aTAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACt                             >  2:8862/1‑149 (MQ=255)                                                                                                                          aGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTg                            >  2:204841/1‑148 (MQ=255)                                                                                                                             aGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAgg                        <  5:340029/149‑1 (MQ=255)                                                                                                                             aGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAgg                        <  6:265163/149‑1 (MQ=255)                                                                                                                                      cGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCa               <  5:117063/149‑1 (MQ=255)                                                                                                                                        aGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACg             <  1:204841/149‑1 (MQ=255)                                                                                                                                                    TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGcagccag                                           <  4:263740‑M1/107‑1 (MQ=255)                                                                                                                                                    TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGcagccag                                           >  3:263740‑M1/1‑107 (MQ=255)                                                                                                                                                    TTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGa  >  3:233016‑M1/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ATGGACAGGTTGTAGGCGAAGTTGCCACTTTGCGTGAGGATCGCCACCCCCTTCTCCACTTGCTGGCCACCATGCGCCACCGGCCACAGGGCGGCACCGTGCAGGTAGTCGAGCAAGCCATAGCAGTTGGGGCCGAGCAAGGCCATGTTGCCGGCG‑‑ACGTCGAGCAGGCGTTGCTGCAACTGGCAGCCCTCCTCACCGCTTTCGGCAAAGCCCGAGGCATAGCAGATGGCGCCACCGGCACCACGTGCAGCCAGCTCGGCAACGCACTGCAGGGTCAGCTCACGGTTGGTGGCGA  >  NC_002947/4249515‑4249809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.