New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	43823 =	46 (0.810)	3 (0.060)	3/240	NT	6.4%	coding (1702/1998 nt)	cadA‑I	cadmium translocating P‑type ATPase
	?	NC_002947	43868 =	45 (0.860)					coding (1657/1998 nt)	cadA‑I	cadmium translocating P‑type ATPase

GATTCTGGTGGATGATCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTG  >  NC_002947/43676‑43969                                                                                                                                                     |                                                                                                                                                   ggcatcgaacgcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggt                                                                                                                                                    <  8:94259‑M1/1‑1 (MQ=255)  gcatcgaacgcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTg                                                                                                                                                   <  8:10699‑M1/2‑1 (MQ=255)   catcgaacgcatggtcatgatttctggagaccacaaccgcgttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTgg                                                                                                                                                  >  7:94259‑M1/147‑149 (MQ=255)   cacccaccgcatggtcttcaattcgggagcccacaaccccggtgcagaggctgtagccaaacaagttcgcttagatcacgcgtggggagacctgatgccggacgacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTgg                                                                                                                                                  >  2:67710‑M1/147‑149 (MQ=255)        gtggATGATCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATgg                                                                                                                                            <  5:340368/149‑1 (MQ=255)                   atcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAggg                                                                                                                                       >  4:333821/1‑143 (MQ=255)                   atcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAggg                                                                                                                                       <  3:333821/143‑1 (MQ=255)                   atcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCAGAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGCACTGGCCATGGCCGGGGcctcc                                                                                                                                 >  8:209794/1‑148 (MQ=255)                    tcgCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGcatcat                                                                                                                                <  1:130575/149‑1 (MQ=255)                          gtgACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGc                                                                                                                          >  5:214265/1‑149 (MQ=255)                            gACGGCACAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCg                                                                                                                        >  6:284662/1‑149 (MQ=255)                             aCGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGt                                                                                                                       >  2:205857/1‑149 (MQ=255)                             aCGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGt                                                                                                                       <  1:205857/149‑1 (MQ=255)                                 cTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTcacc                                                                                                                   >  5:32250/1‑149 (MQ=255)                                  tCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTcacc                                                                                                                   >  4:322021/1‑148 (MQ=255)                                       cccACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGcc                                                                                                                         >  3:83102/1‑137 (MQ=255)                                       cccACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGcc                                                                                                                         <  4:83102/137‑1 (MQ=255)                                           gttgcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCatgag                                                                                                          <  7:338796‑M1/43‑3 (MQ=255)                                           gtagcagaggctgtagccaaacaagttgccttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCAt                                                                                                             >  8:338796‑M1/107‑146 (MQ=255)                                             gCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCAc                                                                                                       >  1:261934/1‑149 (MQ=255)                                              gcagaggctgtagccaaacaagttggcttagatgaagcgtggggagacctgatgccggaagacaaggtcaaggccatcaaaaacctgcgccttagcgccaaggTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCa                                                                                                        >  1:208024‑M1/104‑148 (MQ=255)                                                        ttGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTaa                                                                                            <  6:32250/149‑1 (MQ=255)                                                          gCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAg                                                                                           <  3:322021/148‑1 (MQ=255)                                                               aTGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGgcgc                                                                                       <  3:158040/147‑1 (MQ=255)                                                                tGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAgg                                                                                    <  5:284662/149‑1 (MQ=255)                                                                         ccATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATg                                                                           >  7:308237/1‑149 (MQ=255)                                                                          cATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCCGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATgg                                                                          >  1:69864/1‑149 (MQ=255)                                                                          cATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTg                                                                              >  5:44216/1‑145 (MQ=255)                                                                          cATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTg                                                                              <  6:44216/145‑1 (MQ=255)                                                                           aTAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCACCA‑ATTGCGATAACACCGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGTCGCATGTTTTTGATg                                                                           >  2:246852/1‑147 (MQ=255)                                                                            tAAGCGCTATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGcc                                                                        <  5:241073/149‑1 (MQ=255)                                                                              aGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCtt                                                                      <  2:288221/149‑1 (MQ=255)                                                                               gcgcGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCtt                                                                      >  7:10699/1‑148 (MQ=255)                                                                                   gATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCCTATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGAcc                                                                  >  1:250138/1‑149 (MQ=255)                                                                                       tCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGTGCATCATTGACGCCGTCACCCACCATCGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGt                                                              <  8:111862/148‑1 (MQ=255)                                                                                       tCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTc                                                             <  2:334384/149‑1 (MQ=255)                                                                                          gCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCCACGCTCGCACTGGCCATGGCAGGGGCAGCATTGATGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTc                                                          <  7:209794/149‑1 (MQ=255)                                                                                          gCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTc                                                          >  5:90020/1‑149 (MQ=255)                                                                                          gCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTc                                                          <  2:250138/149‑1 (MQ=255)                                                                                            cGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCg                                                        <  6:214265/149‑1 (MQ=255)                                                                                            cGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCg                                                        <  2:261934/149‑1 (MQ=255)                                                                                                     ggCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGt                                               >  1:185981/1‑149 (MQ=255)                                                                                                         aCATCAGATCCAGCAGCCACC‑ATTGCGATACCAACGCTCCAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTcc                                           <  5:244279/149‑1 (MQ=255)                                                                                                              aGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACg                                      >  8:91545/1‑149 (MQ=255)                                                                                                                   cagcagCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTc                                  <  6:90020/148‑1 (MQ=255)                                                                                                                          cccc‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGc                          <  8:308237/149‑1 (MQ=255)                                                                                                                            cc‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGcc                         >  6:137484/1‑148 (MQ=255)                                                                                                                               aTTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAAc                      >  3:115555/1‑149 (MQ=255)                                                                                                                                    gATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTg                   <  8:189058/147‑1 (MQ=255)                                                                                                                                    gATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGtt                 <  5:137484/149‑1 (MQ=255)                                                                                                                                    gATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGtt                 >  5:127890/1‑149 (MQ=255)                                                                                                                                    gATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTGGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTg                   >  7:189058/1‑147 (MQ=255)                                                                                                                                         cAACGCTCGAACTGGCCATGGCAGGGGCATAATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGc             >  8:98447/1‑148 (MQ=255)                                                                                                                                                   aCTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTg  <  4:115555/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GATTCTGGTGGATGATCGATCGCGTGTGACGGCTCAGCCCCACCGCAAATGGGAGTTGCCTGATGTCGTCAGCCATAAGCGCGATATCAGCCGTTTCCAGGGCAACATCAGATCCAGCAGCCCCC‑ATTGCGATACCAACGCTCGAACTGGCCATGGCAGGGGCATCATTGACGCCGTCACCCACCATGGCCACCTTGGCGCTAAGGCGCAGGTTTTTGATGGCCTTGACCTTGTCTTCCGGCATCAGGTCTCCCCACGCTTCATCTAAGCCAACTTGTTTGGCTACAGCCTCTG  >  NC_002947/43676‑43969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.