New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	487574 =	43 (0.760)	4 (0.070)	3/244	NT	9.3%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	37 (0.690)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

CGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTT  >  NC_002947/487427‑487719                                                                                                                                                    |                                                                                                                                                  cGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAAAAGGGTATCGGCCGGCAGCgg                                                                                                                                                  >  2:301753/1‑149 (MQ=255)  gaacgtgtaacccgtatcctgcatgccgacatgcgcgacaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGc                                                                                                                                                 <  4:311589‑M1/3‑1 (MQ=255)       atCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCCCCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCcgcg                                                                                                                                            >  5:222327/1‑149 (MQ=255)                 ccAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATg                                                                                                                                  >  5:9911/1‑149 (MQ=255)                 ccAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATg                                                                                                                                  >  1:263979/1‑149 (MQ=255)                   aGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGcc                                                                                                                                >  4:215984/1‑149 (MQ=255)                     ggTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCtt                                                                                                                              <  3:166663/149‑1 (MQ=255)                      gTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTc                                                                                                                             <  4:197159/149‑1 (MQ=255)                         aCGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGt                                                                                                                          <  4:328000/149‑1 (MQ=255)                           gTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTgc                                                                                                                        >  2:132015/1‑149 (MQ=255)                                ctgctgCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAAAAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAgg                                                                                                                   <  1:301753/149‑1 (MQ=255)                                 tgctgcGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGAAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGc                                                                                                                  >  7:325698/1‑149 (MQ=255)                                     cgacaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGc                                                                                                              >  2:5864‑M1/112‑149 (MQ=255)                                       gcCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                            <  1:221260/149‑1 (MQ=255)                                       acaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                            >  7:68651‑M1/110‑149 (MQ=255)                                            tttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGc                                                                                                                                                 <  4:322947‑M1/3‑1 (MQ=255)                                            tttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGc                                                                                                                                                 >  3:322947‑M1/105‑107 (MQ=255)                                             gCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCg                                                                                                      >  8:271296/1‑149 (MQ=255)                                              ccTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAAAAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCgg                                                                                                     >  7:228736/1‑149 (MQ=255)                                                tttGTACTTGAGTACGGGAAGGCCCTGGTCGT‑GTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCtt                                                                                                                              >  7:321325/1‑121 (MQ=255)                                                tttGTACTTGAGTACGGGAAGGCCCTGGTCGT‑GTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCtt                                                                                                                              <  8:321325/121‑1 (MQ=255)                                                  tGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTc                                                                                                  <  7:271296/148‑1 (MQ=255)                                                    tACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCga                                                                                                <  3:215984/148‑1 (MQ=255)                                                    tACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCga                                                                                                <  5:182372/148‑1 (MQ=255)                                                         gAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgatgat                                                                                            <  1:132015/147‑1 (MQ=255)                                                             gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                            <  2:346946‑M1/40‑1 (MQ=255)                                                             gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                            >  1:346946‑M1/88‑127 (MQ=255)                                                              cGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                      <  2:263979/148‑1 (MQ=255)                                                              cGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                      <  6:9911/148‑1 (MQ=255)                                                                   aGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATttcttc                                                                                <  2:352063/149‑1 (MQ=255)                                                                   aGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATttcttc                                                                                <  8:228736/149‑1 (MQ=255)                                                                           gTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGcc                                                                          >  5:247506/1‑147 (MQ=255)                                                                               tGGTACATCGCCAGCACCGCCTCGCAGGGCTCCAGATATTTGGGGGTAACCAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTGCATGCCGTCGGGGCGCAGGCGGGCCAGGGGCGGCTCGATGAGGTCGATTTCTTCGCGGCCCAGGTg                                                                    <  5:188568/149‑1 (MQ=255)                                                                                   aCATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGgccg                                                                >  5:223159/1‑149 (MQ=255)                                                                                        gCCAGCAGCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTc                                                           >  7:47532/1‑149 (MQ=255)                                                                                          cAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGc                                                         <  1:344994/149‑1 (MQ=255)                                                                                             cACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCg                                                      >  1:21491/1‑149 (MQ=255)                                                                                             cACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCg                                                      <  6:247506/149‑1 (MQ=255)                                                                                                          tGCTCCAGATAGTTGGGGGTCAACAGGGTCTCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGGCGGCTCGATGAGGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAg                                         <  6:222327/149‑1 (MQ=255)                                                                                                             tCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCa                                                    >  2:337572/1‑135 (MQ=255)                                                                                                             tCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCa                                                    <  1:337572/135‑1 (MQ=255)                                                                                                              ccAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATTATGTCGATTTATTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                     >  7:128993/1‑149 (MQ=255)                                                                                                               cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                     >  4:9505/1‑148 (MQ=255)                                                                                                               cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                     >  4:199374/1‑148 (MQ=255)                                                                                                                aGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGccc                                                       <  6:134236/129‑1 (MQ=255)                                                                                                                aGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGccc                                                       >  5:134236/1‑129 (MQ=255)                                                                                                                           ggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGa                              >  2:57237/1‑143 (MQ=255)                                                                                                                           ggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGa                              <  1:57237/143‑1 (MQ=255)                                                                                                                               aaCAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATAcgcg                     <  8:47532/148‑1 (MQ=255)                                                                                                                                    ggTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTgg               <  8:325698/149‑1 (MQ=255)                                                                                                                                           gccggcAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGc         >  2:272982/1‑148 (MQ=255)                                                                                                                                                cAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACt   >  4:296815/1‑149 (MQ=255)                                                                                                                                                cAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACt   >  4:197829/1‑149 (MQ=255)                                                                                                                                                 aGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACtt  >  6:307200/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CGGATGATCGGCAGGCCCAGGGTCACGTTCACTGCTGCGCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTT  >  NC_002947/487427‑487719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.