New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	487574 =	43 (0.760)	4 (0.070)	3/244	NT	9.3%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	37 (0.690)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

GCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTC  >  NC_002947/487465‑487758                                                                                                                                                     |                                                                                                                                                  gcCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                                                                   <  1:221260/149‑1 (MQ=255) acaagtttggcattgccaacccgcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                                                                   >  7:68651‑M1/110‑149 (MQ=255)       gCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCg                                                                                                                                             >  8:271296/1‑149 (MQ=255)        ccTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAAAAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCgg                                                                                                                                            >  7:228736/1‑149 (MQ=255)            tGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTc                                                                                                                                         <  7:271296/148‑1 (MQ=255)              tACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCga                                                                                                                                       <  5:182372/148‑1 (MQ=255)              tACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCga                                                                                                                                       <  3:215984/148‑1 (MQ=255)                   gAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCgatgat                                                                                                                                   <  1:132015/147‑1 (MQ=255)                       gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                                                                   >  1:346946‑M1/88‑127 (MQ=255)                       gcgtatcctcgtgtgcggcctcaacccgcatgcgggcgagggcggccacctgggccgcgaagaaatcgacatcatcgagccgaccctGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCa                                                                                                                                                   <  2:346946‑M1/40‑1 (MQ=255)                        cGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                                                             <  6:9911/148‑1 (MQ=255)                        cGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGAt                                                                                                                             <  2:263979/148‑1 (MQ=255)                             aGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATttcttc                                                                                                                       <  8:228736/149‑1 (MQ=255)                             aGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATttcttc                                                                                                                       <  2:352063/149‑1 (MQ=255)                                     gTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGcc                                                                                                                 >  5:247506/1‑147 (MQ=255)                                         tGGTACATCGCCAGCACCGCCTCGCAGGGCTCCAGATATTTGGGGGTAACCAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTGCATGCCGTCGGGGCGCAGGCGGGCCAGGGGCGGCTCGATGAGGTCGATTTCTTCGCGGCCCAGGTg                                                                                                           <  5:188568/149‑1 (MQ=255)                                             aCATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGgccg                                                                                                       >  5:223159/1‑149 (MQ=255)                                                  gCCAGCAGCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTc                                                                                                  >  7:47532/1‑149 (MQ=255)                                                    cAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGc                                                                                                <  1:344994/149‑1 (MQ=255)                                                       cACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCg                                                                                             >  1:21491/1‑149 (MQ=255)                                                       cACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCg                                                                                             <  6:247506/149‑1 (MQ=255)                                                                    tGCTCCAGATAGTTGGGGGTCAACAGGGTCTCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGGCGGCTCGATGAGGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAg                                                                                <  6:222327/149‑1 (MQ=255)                                                                       tCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCa                                                                                           >  2:337572/1‑135 (MQ=255)                                                                       tCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCa                                                                                           <  1:337572/135‑1 (MQ=255)                                                                        ccAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATTATGTCGATTTATTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                                                            >  7:128993/1‑149 (MQ=255)                                                                         cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                                                            >  4:9505/1‑148 (MQ=255)                                                                         cAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCg                                                                            >  4:199374/1‑148 (MQ=255)                                                                          aGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGccc                                                                                              <  6:134236/129‑1 (MQ=255)                                                                          aGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGccc                                                                                              >  5:134236/1‑129 (MQ=255)                                                                                     ggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGa                                                                     <  1:57237/143‑1 (MQ=255)                                                                                     ggTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGa                                                                     >  2:57237/1‑143 (MQ=255)                                                                                         aaCAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATAcgcg                                                            <  8:47532/148‑1 (MQ=255)                                                                                              ggTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTgg                                                      <  8:325698/149‑1 (MQ=255)                                                                                                     gccggcAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGc                                                >  2:272982/1‑148 (MQ=255)                                                                                                          cAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACt                                          >  4:296815/1‑149 (MQ=255)                                                                                                          cAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACt                                          >  4:197829/1‑149 (MQ=255)                                                                                                           aGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACtt                                         >  6:307200/1‑149 (MQ=255)                                                                                                             tggcccgcctgcgcaccgaaggcatggacctgcgcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATAcgc                                                             <  2:346946‑M2/87‑1 (MQ=255)                                                                                                             tggcccgcctgcgcaccgaaggcatggacctgcgcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATAcgc                                                             >  1:346946‑M2/41‑127 (MQ=255)                                                                                                             tggcccgcctgcgcaccgaaggcatggacctgcgcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGt                                       >  7:68651‑M2/41‑149 (MQ=255)                                                                                                               gcccgcctgcgcaccgaaggcatggacctgcgcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTcg                                     >  2:5864‑M2/39‑149 (MQ=255)                                                                                                               GCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAgg                                                                   <  5:176427‑M1/119‑1 (MQ=255)                                                                                                               GCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAgg                                                                   >  6:176427‑M1/1‑119 (MQ=255)                                                                                                                CCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTcgc                                    <  1:257061‑M1/149‑1 (MQ=255)                                                                                                                              tGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATg                       >  3:157894/1‑148 (MQ=255)                                                                                                                              tGCCATCGGTGCGCAGGCGGGCCAGTGTCGGCTCGATGATGTCGATTTCTTCGAGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGc                      <  4:258737/149‑1 (MQ=255)                                                                                                                                ccTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCa                     <  4:157894/148‑1 (MQ=255)                                                                                                                                  ttCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGa                  >  1:199439/1‑149 (MQ=255)                                                                                                                                           cAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACgg             <  4:257179/145‑1 (MQ=255)                                                                                                                                           cAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACgg             >  3:257179/1‑145 (MQ=255)                                                                                                                                           cAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTa         >  3:311589/1‑149 (MQ=255)                                                                                                                                           cAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTa         <  2:257061/149‑1 (MQ=255)                                                                                                                                             ggCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTaca       <  6:53016/149‑1 (MQ=255)                                                                                                                                                  gccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCaaa                                            <  4:322947‑M2/104‑1 (MQ=255)                                                                                                                                                  gccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCaaa                                            >  3:322947‑M2/4‑107 (MQ=255)                                                                                                                                                  gccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTc  <  4:311589‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCCGAAGCCTTTGTACTTGAGTACGGGAAGGCCCTGGTCGTGGTACATCGCCAGCACCGCATCGCAGTGCTCCAGATATTTGGGGGTAAACAGGGTATCGGCCGGCAGCGGCCCGCGCAGGTCCATGCCTTCGGTGCGCAGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTC  >  NC_002947/487465‑487758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.