New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 76579539 (0.690)3 (0.050) 3/250 NT 6.5% coding (390/936 nt) PP_0658 homocysteine S‑methyltransferase family protein
?NC_002947 = 765837 49 (0.890)coding (432/936 nt) PP_0658 homocysteine S‑methyltransferase family protein

GTGAAGAACGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTG  >  NC_002947/765647‑765942
                                                                                                                                                    |                                                                                                                                                    
gTGAAGAACGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGCCCTGTTCCAG                                                                                                                                                      >  4:100053‑M1/1‑149 (MQ=255)
gTGAAGAACGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAG                                                                                                                                                      <  3:250713‑M1/149‑1 (MQ=255)
   aagaaCGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGccc                                                                                                                                                   >  4:195429/1‑149 (MQ=255)
     gaaCGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGccc                                                                                                                                                   >  6:207525/1‑147 (MQ=255)
       aCGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGc                                                                                                                                               <  7:175337/149‑1 (MQ=255)
           tttGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCgtgt                                                                                                                                           >  1:265498/1‑149 (MQ=255)
             tGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCgtg                                                                                                                                            <  8:254525/146‑1 (MQ=255)
             tGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCgtg                                                                                                                                            >  7:254525/1‑146 (MQ=255)
               ccgccgAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTgg                                                                                                                                         >  5:111103/1‑147 (MQ=255)
                cgccgAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGCGCGTGTgg                                                                                                                                         >  4:238333/1‑146 (MQ=255)
                       gggCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGGGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACGTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCt                                                                                                                               <  7:84558/149‑1 (MQ=255)
                                       atatCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAg                                                                                                               <  8:77638/149‑1 (MQ=255)
                                       atatCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAg                                                                                                               >  5:307154/1‑149 (MQ=255)
                                           cGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCc                                                                                                           <  2:314648‑M2/149‑2 (MQ=255)
                                            gCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGTGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCc                                                                                                           >  6:31222‑M2/1‑147 (MQ=255)
                                            gCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGtgtg                                                                                                                                          <  6:258630/117‑1 (MQ=255)
                                            gCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGtgtg                                                                                                                                          >  5:258630/1‑117 (MQ=255)
                                              aGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctgg                                                                                                        <  4:8113‑M2/149‑5 (MQ=255)
                                                  cAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGcccc                                                                                                    <  3:238333/149‑1 (MQ=255)
                                                   aGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGgccctggagcaacggggtcagcacctctgccacacgctcgggctggaacag                                                                                                   <  7:94056‑M1/149‑52 (MQ=255)
                                                         cgcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGtt                                                                                            <  2:247579/149‑1 (MQ=255)
                                                         cgcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGt                                                                                              <  6:307154/148‑1 (MQ=255)
                                                          gcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTg                                                                                           >  6:42514/1‑149 (MQ=255)
                                                            ggcacgcggcaGATAGCGGCGCGCTCCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGAc                                                                                         <  4:287728/149‑1 (MQ=255)
                                                            ggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGAc                                                                                         <  6:212045/149‑1 (MQ=255)
                                                            ggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGAc                                                                                         <  8:16734/149‑1 (MQ=255)
                                                               acgcggcaGATAGCGGCGCGCACCCGGTCCGGGTGGCAGGGGCGCGGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCCGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCtg                                                                                      <  3:90126/149‑1 (MQ=255)
                                                               acgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCtg                                                                                      <  3:90123/149‑1 (MQ=255)
                                                                cgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCtgt                                                                                     <  3:8113/149‑1 (MQ=255)
                                                                   ggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtggc                                                                                  >  3:215294/1‑149 (MQ=255)
                                                                    gcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtggct                                                                                 <  1:314648/149‑1 (MQ=255)
                                                                              gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtgg                                                                                   >  3:297976/1‑137 (MQ=255)
                                                                              gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtgg                                                                                   <  4:297976/137‑1 (MQ=255)
                                                                              gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGGGGCTGGCCGAAAcc                                                                       <  6:111103/149‑1 (MQ=255)
                                                                                       cGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTcc                                                              <  7:28311/149‑1 (MQ=255)
                                                                                       cGGGCAGCGTGGCAGGGTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTGCCAGCCCGAGCGTGGGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTcc                                                              <  2:265498/149‑1 (MQ=255)
                                                                                                tGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGgccctggagcaacggggtcagcacctctgccacacgctcgggctggaaca                                                                                                    <  7:17654‑M1/103‑51 (MQ=255)
                                                                                                tGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGgccctggagcaacggggtcagcacctctgccacacgctcgggctggaaca                                                                                                    >  8:17654‑M1/1‑53 (MQ=255)
                                                                                                tGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCg                                                       >  5:35405/1‑147 (MQ=255)
                                                                                                                   gcTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGc                                   >  1:182692/1‑148 (MQ=255)
                                                                                                                   gcTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGc                                   >  6:341911/1‑148 (MQ=255)
                                                                                                                          gggTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGcc                           <  6:35405/149‑1 (MQ=255)
                                                                                                                                 aCCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGAc                    >  6:123897/1‑149 (MQ=255)
                                                                                                                                        cGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGc             <  5:341911/149‑1 (MQ=255)
                                                                                                                                            cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgccaccctgaccgggtgcgcgccgctatctgccgcgtgccgcgcaagct          <  7:94056‑M2/149‑99 (MQ=255)
                                                                                                                                            cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtggctggc                                                                              >  6:101935/1‑80 (MQ=255)
                                                                                                                                            cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGtggctggc                                                                              <  5:101935/80‑1 (MQ=255)
                                                                                                                                            cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGtt         >  2:205432/1‑149 (MQ=255)
                                                                                                                                             tGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgcca                                                       >  8:17654‑M2/1‑50 (MQ=255)
                                                                                                                                             tGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgcca                                                       <  7:17654‑M2/103‑54 (MQ=255)
                                                                                                                                               ttCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTc        <  4:215294/147‑1 (MQ=255)
                                                                                                                                               ttCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTg      >  1:199946/1‑149 (MQ=255)
                                                                                                                                                 ccAGgccctggagcaacggggtcagcacctctgccacacgctcgggctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgccaccctgaccgggtgcgcgccgctatctgccgcgtgccgcgcaagctggcct     <  4:8113‑M1/149‑146 (MQ=255)
                                                                                                                                                 ccAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTgg     <  5:207525/148‑1 (MQ=255)
                                                                                                                                                    ggccctggagcaacggggtcagcacctctgccacacgctcgggctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgccaccctgaccgggtgcgcgccgctatctgccgcgtgccgcgcaagctggcctgcg  <  2:314648‑M1/149‑149 (MQ=255)
                                                                                                                                                    ggccctggagcaacggggtcagcacctctgccacacactcgggctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgccaccctgaccgggtgcgcgccgctatctgccgcgtgccgcgcaagctggcctgc   >  6:31222‑M1/1‑1 (MQ=255)
                                                                                                                                                    gCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTGATGCCTGTGGCTGGCCCAAACCCACAGGTACCTTGCCGAAGTGCGGGCCATTAAAAACCATTTTCCCGCAAAAGGCCAGCCGttaatggtt  >  1:98978/1‑142 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GTGAAGAACGCTTTGCCGCCGAAGGGCGACAGCTGGCCCATATCGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTTGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTG  >  NC_002947/765647‑765942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.