New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 765795	39 (0.690)	3 (0.050)	3/250	NT	6.5%	coding (390/936 nt)	PP_0658	homocysteine S‑methyltransferase family protein
	?	NC_002947	= 765837	49 (0.890)					coding (432/936 nt)	PP_0658	homocysteine S‑methyltransferase family protein

CGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTCCGCGCC  >  NC_002947/765690‑765985                                                                                                                                                    |                                                                                                                                                      cGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCc                                                                                                                                                      <  2:314648‑M2/149‑2 (MQ=255)  gCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGTGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCc                                                                                                                                                      >  6:31222‑M2/1‑147 (MQ=255)    aGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctgg                                                                                                                                                   <  4:8113‑M2/149‑5 (MQ=255)        cAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGcccc                                                                                                                                               <  3:238333/149‑1 (MQ=255)               cgcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGt‑t                                                                                                                                       <  2:247579/149‑1 (MQ=255)               cgcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGt                                                                                                                                         <  6:307154/148‑1 (MQ=255)                gcggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑Tg                                                                                                                                      >  6:42514/1‑149 (MQ=255)                  ggcacgcggcaGATAGCGGCGCGCTCCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGAc                                                                                                                                    <  4:287728/149‑1 (MQ=255)                  ggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGAc                                                                                                                                    <  6:212045/149‑1 (MQ=255)                  ggcacgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGAc                                                                                                                                    <  8:16734/149‑1 (MQ=255)                     acgcggcaGATAGCGGCGCGCACCCGGTCCGGGTGGCAGGGGCGCGGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCCGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCtg                                                                                                                                 <  3:90126/149‑1 (MQ=255)                     acgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCtg                                                                                                                                 <  3:90123/149‑1 (MQ=255)                      cgcggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCtgt                                                                                                                                <  3:8113/149‑1 (MQ=255)                         ggcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtggc                                                                                                                             >  3:215294/1‑149 (MQ=255)                          gcaGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtggct                                                                                                                            <  1:314648/149‑1 (MQ=255)                                    gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtgg                                                                                                                              >  3:297976/1‑137 (MQ=255)                                    gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtgg                                                                                                                              <  4:297976/137‑1 (MQ=255)                                    gcgcgcACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGGGGCTGGCCGAAAcc                                                                                                                  <  6:111103/149‑1 (MQ=255)                                             cGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTcc                                                                                                         <  7:28311/149‑1 (MQ=255)                                             cGGGCAGCGTGGCAGGGTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTGCCAGCCCGAGCGTGGGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTcc                                                                                                         <  2:265498/149‑1 (MQ=255)                                                      tGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCg                                                                                                  >  5:35405/1‑147 (MQ=255)                                                                         gcTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGc                                                                              >  6:341911/1‑148 (MQ=255)                                                                         gcTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGc                                                                              >  1:182692/1‑148 (MQ=255)                                                                                gggTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGcc                                                                      <  6:35405/149‑1 (MQ=255)                                                                                       aCCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGAc                                                               >  6:123897/1‑149 (MQ=255)                                                                                              cGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGc                                                        <  5:341911/149‑1 (MQ=255)                                                                                                  cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgccaccctgaccgggtgcgcgccgctatctgccgcgtgccgcgcaagct                                                     <  7:94056‑M2/149‑99 (MQ=255)                                                                                                  cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtggctggc                                                                                                                         >  6:101935/1‑80 (MQ=255)                                                                                                  cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGtggctggc                                                                                                                         <  5:101935/80‑1 (MQ=255)                                                                                                  cTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGtt                                                    >  2:205432/1‑149 (MQ=255)                                                                                                   tGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgcca                                                                                                  <  7:17654‑M2/103‑54 (MQ=255)                                                                                                   tGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCctggaacaggtcgggccggtaggacccgaacagcggcggcagcgaacctgcca                                                                                                  >  8:17654‑M2/1‑50 (MQ=255)                                                                                                     ttCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTc                                                   <  4:215294/147‑1 (MQ=255)                                                                                                     ttCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTg                                                 >  1:199946/1‑149 (MQ=255)                                                                                                       ccAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTgg                                                <  5:207525/148‑1 (MQ=255)                                                                                                          gCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGTGATGCCTGTGGCTGGCCCAAACCCACAGGTACCTTGCCGAAGTGCGGGCCATTAAAAACCATTTTCCCGCAAAAGGCCAGCCGttaatggtt                                             >  1:98978/1‑142 (MQ=255)                                                                                                                       gCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGc                                <  7:101066/148‑1 (MQ=255)                                                                                                                         agagGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAg                              >  2:16068/1‑148 (MQ=255)                                                                                                                             gTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGAc                           >  3:32051/1‑147 (MQ=255)                                                                                                                               gCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAgg                       <  2:199946/149‑1 (MQ=255)                                                                                                                                cTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAgg                       <  5:42514/148‑1 (MQ=255)                                                                                                                                 tGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCa                                      <  8:29757/132‑1 (MQ=255)                                                                                                                                 tGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCa                                      >  7:29757/1‑132 (MQ=255)                                                                                                                                   aCCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGaa                     <  5:123897/147‑1 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGt                                                                                                       >  4:44452/1‑63 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGt                                                                                                       <  3:44452/63‑1 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAg                              <  4:117235/136‑1 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTc                  >  4:181137/1‑148 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTAACCCTGCAg                              >  3:117235/1‑136 (MQ=255)                                                                                                                                     cccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGGTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTc                  >  5:343795/1‑148 (MQ=255)                                                                                                                                      ccGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTcga                <  2:98978/149‑1 (MQ=255)                                                                                                                                           gCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAgg           >  6:233062/1‑149 (MQ=255)                                                                                                                                             tCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGtt         >  6:329798/1‑149 (MQ=255)                                                                                                                                               cAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTcn       <  2:182692/149‑2 (MQ=255)                                                                                                                                               cAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTcc       <  5:329798/149‑1 (MQ=255)                                                                                                                                               cAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTcc       >  1:345742/1‑149 (MQ=255)                                                                                                                                                    ccTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTCCGCGcc  >  4:59342/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGCAGGCCAGCTTGCGCGGCACGCGGCAGATAGCGGCGCGCACCCGGTCAGGGTGGCAGGTTCGCTGCCGCCGCTGTTCGGGTCCTACCGGCCCGACCTGTTCCAGCCCGAGCGTGTGGCAGAGGTGCTGACCCCGTTGCTCCAGGGCCTGGCCCCGCATGT‑TGACCTGTGGCTGGCCGAAACCCAGAGTTCCGTGGCCGAAGTGCGAGCCATTCATAGCCATTTGCCGGCAGACGGCAGGCCGTTCTGGGTGTCCTTCACCCTGCAGGACGAGGAAGTCGACGAGGTTCCGCGCC  >  NC_002947/765690‑765985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.