New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1617057 =	41 (0.730)	3 (0.060)	3/248	NT	6.4%	coding (202/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	1617095 =	49 (0.900)					coding (164/1515 nt)	PP_1416	tricarboxylate transport protein TctA

AGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGT  >  NC_002947/1616910‑1617203                                                                                                                                                    |                                                                                                                                                   aGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCg                                                                                                                                                   >  3:289742/1‑149 (MQ=255)    gggccagggcttcggcattgccctgtccccctacaacctggtcaccgccctctccggcaccttgatcggcaccgtggtcggcctgctaccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGcc                                                                                                                                                <  5:141517‑M1/5‑1 (MQ=255)                 ggCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCa                                                                                                                                      <  8:263501/146‑1 (MQ=255)                 ggCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCa                                                                                                                                      >  7:263501/1‑146 (MQ=255)                 ggCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAgcg                                                                                                                                   <  5:253697/149‑1 (MQ=255)                      cacCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGAGCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGAt                                                                                                                              <  5:265710/149‑1 (MQ=255)                         cGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTcc                                                                                                                           >  8:142602/1‑149 (MQ=255)                           gCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCcgg                                                                                                                         >  7:45397/1‑149 (MQ=255)                           gCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCcgg                                                                                                                         >  6:268943/1‑149 (MQ=255)                             cAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCcggcg                                                                                                                       >  1:153303/1‑149 (MQ=255)                                       acctggtcaccgccctctccggcaccttgatcggcaccgtggtcggcctgctaccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAg                                                                                                             >  4:26102‑M1/110‑149 (MQ=255)                                        gggCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg                                                                                                            <  2:153303/149‑1 (MQ=255)                                         ctggtcaccgccctctccggcaccttgatcggcaccgtggtcggcctgctaccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAggg                                                                                                           >  6:42325‑M1/108‑149 (MQ=255)                                            cATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCGCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCa                                                                                                         >  8:48235/1‑148 (MQ=255)                                              tCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAg                                                                                                      >  4:294270/1‑149 (MQ=255)                                                gggTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGc                                                                                                    <  8:45397/149‑1 (MQ=255)                                                        aTCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGa                                                                                            <  4:289742/149‑1 (MQ=255)                                                         tCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGAt                                                                                           <  7:48235/149‑1 (MQ=255)                                                                              gAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGAt                                                                      >  5:150357/1‑149 (MQ=255)                                                                               aGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc                                                                     >  3:11129/1‑149 (MQ=255)                                                                                ggCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGt                                                                          <  3:39704/143‑1 (MQ=255)                                                                                ggCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGt                                                                          >  4:39704/1‑143 (MQ=255)                                                                                  cTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCggg                                                                  <  3:294270/149‑1 (MQ=255)                                                                                   ttCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCcggc                                                                                                                        >  1:261230/1‑94 (MQ=255)                                                                                   ttCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCcggc                                                                                                                        <  2:261230/94‑1 (MQ=255)                                                                                       cccGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCAACGCCGTTGATCGGGCCCAg                                                             >  7:284325/1‑149 (MQ=255)                                                                                         cGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc                                                           <  1:268630/149‑1 (MQ=255)                                                                                          taccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAg                                                                                                             <  2:264551‑M1/40‑1 (MQ=255)                                                                                                     cagGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc                                                                     <  8:120194/127‑1 (MQ=255)                                                                                                     cagGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc                                                                     >  7:120194/1‑127 (MQ=255)                                                                                                          tCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGAcc                                          >  3:309551/1‑149 (MQ=255)                                                                                                            gAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg                                                                                                            <  8:232283/81‑1 (MQ=255)                                                                                                            gAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg                                                                                                            >  7:232283/1‑81 (MQ=255)                                                                                                                  aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc                                                           >  3:332609/1‑124 (MQ=255)                                                                                                                  aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc                                                           <  4:332609/124‑1 (MQ=255)                                                                                                                  aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGc                                   <  6:150357/148‑1 (MQ=255)                                                                                                                      gcccgccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGAt                               >  8:204215/1‑148 (MQ=255)                                                                                                                         cgccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGt                                                      >  6:354871/1‑122 (MQ=255)                                                                                                                           ccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGCTAGAAGGCCGACCACGGTGCCGATCAAGGt                         >  4:349159/1‑149 (MQ=255)                                                                                                                             atatTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGATGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGc                       <  8:284325/149‑1 (MQ=255)                                                                                                                                      gCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAggg              >  5:91120/1‑149 (MQ=255)                                                                                                                                      gCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAggg              <  7:140242/149‑1 (MQ=255)                                                                                                                                       cccAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGc             <  7:204215/149‑1 (MQ=255)                                                                                                                                       cccAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGc             >  6:141517/1‑149 (MQ=255)                                                                                                                                         cAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCgg           <  5:268943/149‑1 (MQ=255)                                                                                                                                          aGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGt          <  7:142602/149‑1 (MQ=255)                                                                                                                                               cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGGTCAAGGTGCCGGAGAGGGCGGt          <  1:298649/144‑1 (MQ=255)                                                                                                                                               cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGGTCAAGGTGCCGGAGAGGGCGGt          >  2:298649/1‑144 (MQ=255)                                                                                                                                               cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCa     <  5:3651/149‑1 (MQ=255)                                                                                                                                                 cTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAgg   >  5:31723/1‑149 (MQ=255)                                                                                                                                                 cTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAgg   >  3:200011/1‑149 (MQ=255)                                                                                                                                                  tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCCGGCCGCCCACGGTGCCGATCAAGGTGCCGGAGCGGGCGGTGCCCAGGt  >  4:33779/1‑149 (MQ=255)                                                                                                                                                  tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGt                         <  3:41860/126‑1 (MQ=255)                                                                                                                                                  tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGt                         >  4:41860/1‑126 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AGGCCGACAGCGACAGGGCAACACCGGCCAGGCCCTGGCGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGT  >  NC_002947/1616910‑1617203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.