New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1617057 = | 41 (0.730) | 3 (0.060) | 3/248 | NT | 6.4% | coding (202/1515 nt) | PP_1416 | tricarboxylate transport protein TctA |
? | NC_002947 | 1617095 = | 49 (0.900) | coding (164/1515 nt) | PP_1416 | tricarboxylate transport protein TctA |
CGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGCCCTGGCCC > NC_002947/1616948‑1617238 | acctggtcaccgccctctccggcaccttgatcggcaccgtggtcggcctgctaccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAg > 4:26102‑M1/110‑149 (MQ=255) gggCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg < 2:153303/149‑1 (MQ=255) ctggtcaccgccctctccggcaccttgatcggcaccgtggtcggcctgctaccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAggg > 6:42325‑M1/108‑149 (MQ=255) cATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCGCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCa > 8:48235/1‑148 (MQ=255) tCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAg > 4:294270/1‑149 (MQ=255) gggTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGc < 8:45397/149‑1 (MQ=255) aTCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGa < 4:289742/149‑1 (MQ=255) tCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGAt < 7:48235/149‑1 (MQ=255) gAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGAt > 5:150357/1‑149 (MQ=255) aGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc > 3:11129/1‑149 (MQ=255) ggCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGt > 4:39704/1‑143 (MQ=255) ggCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGt < 3:39704/143‑1 (MQ=255) cTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCggg < 3:294270/149‑1 (MQ=255) cccGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCAACGCCGTTGATCGGGCCCAg > 7:284325/1‑149 (MQ=255) cGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc < 1:268630/149‑1 (MQ=255) taccgggcctgggcccgatcaacggcgtggccctgctgatccccatcgcctttgccctCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAg < 2:264551‑M1/40‑1 (MQ=255) cagGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc < 8:120194/127‑1 (MQ=255) cagGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATc > 7:120194/1‑127 (MQ=255) tCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGAcc > 3:309551/1‑149 (MQ=255) gAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg < 8:232283/81‑1 (MQ=255) gAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAgg > 7:232283/1‑81 (MQ=255) aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc > 3:332609/1‑124 (MQ=255) aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGc < 4:332609/124‑1 (MQ=255) aTACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGc < 6:150357/148‑1 (MQ=255) gcccgccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGAt > 8:204215/1‑148 (MQ=255) cgccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGt > 6:354871/1‑122 (MQ=255) ccATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGCTAGAAGGCCGACCACGGTGCCGATCAAGGt > 4:349159/1‑149 (MQ=255) atatTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGATGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGc < 8:284325/149‑1 (MQ=255) gCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAggg > 5:91120/1‑149 (MQ=255) gCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAggg < 7:140242/149‑1 (MQ=255) cccAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGc > 6:141517/1‑149 (MQ=255) cccAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGc < 7:204215/149‑1 (MQ=255) cAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCgg < 5:268943/149‑1 (MQ=255) aGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGt < 7:142602/149‑1 (MQ=255) cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGGTCAAGGTGCCGGAGAGGGCGGt > 2:298649/1‑144 (MQ=255) cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGGTCAAGGTGCCGGAGAGGGCGGt < 1:298649/144‑1 (MQ=255) cacTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCa < 5:3651/149‑1 (MQ=255) ccctcggcctgccgccggaatcggcgctgatcctgctggccgAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAg > 6:42325‑M2/43‑149 (MQ=255) cTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAgg > 3:200011/1‑149 (MQ=255) cTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAgg > 5:31723/1‑149 (MQ=255) tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCCGGCCGCCCACGGTGCCGATCAAGGTGCCGGAGCGGGCGGTGCCCAGGt > 4:33779/1‑149 (MQ=255) tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGt > 4:41860/1‑126 (MQ=255) tGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGt < 3:41860/126‑1 (MQ=255) ctcggcctgccgccggaatcggcgctgatcctgctggccgAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTa < 2:264551‑M2/58‑1 (MQ=255) ctcggcctgccgccggaatcggcgctgatcctgctggccgAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGt > 4:26102‑M2/41‑149 (MQ=255) GCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTa < 2:347625‑M1/149‑1 (MQ=255) agcagGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGACGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAggg < 1:141214/149‑1 (MQ=255) gcagGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAACGGCGATGGGGATCAGCAGGGCCACGCCGTTGAGCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAgggg < 3:33779/149‑1 (MQ=255) agGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGa < 6:31723/149‑1 (MQ=255) aTCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAg > 5:147731/1‑149 (MQ=255) gcgcCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGt > 6:344501/1‑132 (MQ=255) gcgcCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGt < 5:344501/132‑1 (MQ=255) gcgcCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGc > 2:8318/1‑148 (MQ=255) gcgcCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGc > 6:52850/1‑148 (MQ=255) cGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGCCCAGGTTGTAGGGGGACAGGGCAATGc > 2:187677/1‑149 (MQ=255) gATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGTGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGcc > 5:96639/1‑149 (MQ=255) gATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGcc > 1:177072/1‑149 (MQ=255) cggcggCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGc > 5:199682/1‑149 (MQ=255) ggcggcAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGcc > 4:124702/1‑149 (MQ=255) gcAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGCCCTgg < 4:200011/149‑1 (MQ=255) ggccgAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGCCCTGGccc < 5:141517‑M2/144‑1 (MQ=255) | CGGGCCATCGGGTAACCATCGAGGGTGGTCATGACGGTCGAGGCTTCGCCCGGGATGTTCAGCAGGATCGAGCTGATACGCCCGCCATATTCGCAGCCCAGGTACACTGCGGCCAGCAGGATCAGCGCCGATTCCGGCGGCAGGCCGAGGGCAAAGGCGATGGGGATCAGCAGGGCCACGCCGTTGATCGGGCCCAGGCCCGGTAGCAGGCCGACCACGGTGCCGATCAAGGTGCCGGAGAGGGCGGTGACCAGGTTGTAGGGGGACAGGGCAATGCCGAAGCCCTGGCCC > NC_002947/1616948‑1617238 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |