| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2057823 | 18 (0.320) | 4 (0.090) | 3/210 | NT | 15.5% | intergenic (+39/+89) | PP_1832/PP_1833 | oxidase/hypothetical protein |
| ? | NC_002947 | = 2057863 | 29 (0.630) | intergenic (+79/+49) | PP_1832/PP_1833 | oxidase/hypothetical protein | |||||
TACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCA > NC_002947/2057676‑2057970 | tACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACa < 8:4646/149‑1 (MQ=255) cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgac > 8:30216‑M1/1‑146 (MQ=255) cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGATGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgac > 8:251235‑M1/1‑146 (MQ=255) cacCGTTTTGCCTGGCGTGTCGCTGGTATGGTAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAtt < 6:252103/149‑1 (MQ=255) ccTGGCGTTGCGATTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGa < 7:296127/149‑1 (MQ=255) tGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGa > 5:328510/1‑139 (MQ=255) tGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGa < 6:328510/139‑1 (MQ=255) ttGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGc < 6:176606/139‑1 (MQ=255) ttGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGc > 5:176606/1‑139 (MQ=255) ttGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGggcgg > 7:89139/1‑149 (MQ=255) tATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTTACTGCGCGCTTCCGAAGGgcggcg > 2:260118/1‑148 (MQ=255) tGGCAGCGAGCAGGGCATGCAGCCGCGGTTTACGGGCGATGTGACTGCGCGGGCATATCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAAACCGCACCTACATTAACAGCGCGATGCCTAAGGGCGGCCCaa > 6:347627/1‑149 (MQ=255) gCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAAACCGCTCCTACATTTAAATCGCGATTCCTAAGGGCGGCGCAACCctc > 7:157075/1‑149 (MQ=255) gAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGGCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCgtcgg > 2:1491/1‑149 (MQ=255) cAGGGCATGCAGGCGCGGTTTACGGGCGATGTGGCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCg > 1:1491‑M2/1‑148 (MQ=255) cAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgg < 7:251235‑M1/149‑51 (MQ=255) cAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgg < 7:30216‑M1/149‑51 (MQ=255) gcgcGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggtt > 2:312361‑M2/1‑136 (MQ=255) tttACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTTCATTGACTGCGCGATGCCGAAGGGCGGCGCAACCGTGGGTCgtaggagcggggtcacccg < 4:227233‑M2/149‑20 (MQ=255) aCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcaccc < 2:13479‑M1/133‑59 (MQ=255) aCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcaccc > 1:13479‑M1/1‑75 (MQ=255) aCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTc < 5:347627/149‑1 (MQ=255) cgcgGGCATTGCTTGGTATCGTCGCGCGGTAAGCGCTTGTCCGGCCGCTTCTCGGGTGAACCCGCTCCTACATGGACTGCGCGTTGCCTAAGGGCGGCGCAAGGGTCGGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCat < 5:157092/147‑2 (MQ=255) tttCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTGCTACATTGAGTGCGCGATGCCTAAGGTCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACAcc < 5:363180/149‑1 (MQ=255) tGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCCCGCCGACATTGACATCGCGCTGCCGAAGGGCGGCGCCACCGGCGGGAGGAGGCGCGGGTTGGCCCGCGACGAGGCCAGGTGACGGCAGAAC‑CCCCGCAGCGGTGGGTCggc > 4:221140/1‑148 (MQ=255) gctttGCCGGCCGCGTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCaaa < 8:157075/146‑1 (MQ=255) gcgGGTGAACCCGCTCCTACATTGACTCCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgc < 3:227233/148‑1 (MQ=255) cgGGTGACCCCGCTCCTACgacccacggttgcgccgcccttcggcatcgcgcagtcaatgaaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaa < 4:227233‑M1/149‑131 (MQ=255) gggTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagt > 1:13479‑M2/1‑58 (MQ=255) gggTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagt < 2:13479‑M2/133‑76 (MQ=255) gAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCAGGCTCTGCAGCATc > 4:113864/1‑148 (MQ=255) aaCCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgc > 2:312361‑M1/1‑13 (MQ=255) aCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATc > 8:51414/1‑146 (MQ=255) cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTg > 7:253003/1‑138 (MQ=255) cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTg < 8:253003/138‑1 (MQ=255) ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg < 7:30216‑M2/149‑100 (MQ=255) ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg < 7:251235‑M2/149‑100 (MQ=255) cgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagccacatcgcccgtaaaccgcgcctgcatgccctg > 1:1491‑M1/1‑1 (MQ=255) | TACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCA > NC_002947/2057676‑2057970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |