| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2057823 | 18 (0.320) | 4 (0.090) | 3/210 | NT | 15.5% | intergenic (+39/+89) | PP_1832/PP_1833 | oxidase/hypothetical protein |
| ? | NC_002947 | = 2057863 | 29 (0.630) | intergenic (+79/+49) | PP_1832/PP_1833 | oxidase/hypothetical protein | |||||
CAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGC > NC_002947/2057716‑2058007 | cAGGGCATGCAGGCGCGGTTTACGGGCGATGTGGCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCg > 1:1491‑M2/1‑148 (MQ=255) gcgcGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggtt > 2:312361‑M2/1‑136 (MQ=255) tttACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTTCATTGACTGCGCGATGCCGAAGGGCGGCGCAACCGTGGGTCgtaggagcggggtcacccg < 4:227233‑M2/149‑20 (MQ=255) aCTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTc < 5:347627/149‑1 (MQ=255) cgcgGGCATTGCTTGGTATCGTCGCGCGGTAAGCGCTTGTCCGGCCGCTTCTCGGGTGAACCCGCTCCTACATGGACTGCGCGTTGCCTAAGGGCGGCGCAAGGGTCGGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCat < 5:157092/147‑2 (MQ=255) tttCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTGCTACATTGAGTGCGCGATGCCTAAGGTCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACAcc < 5:363180/149‑1 (MQ=255) tGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCCCGCCGACATTGACATCGCGCTGCCGAAGGGCGGCGCCACCGGCGGGAGGAGGCGCGGGTTGGCCCGCGACGAGGCCAGGTGACGGCAGAAC‑CCCCGCAGCGGTGGGTCggc > 4:221140/1‑148 (MQ=255) gctttGCCGGCCGCGTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCaaa < 8:157075/146‑1 (MQ=255) gcgGGTGAACCCGCTCCTACATTGACTCCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgc < 3:227233/148‑1 (MQ=255) gggTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagt < 2:13479‑M2/133‑76 (MQ=255) gggTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagt > 1:13479‑M2/1‑58 (MQ=255) gAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCAGGCTCTGCAGCA‑Tc > 4:113864/1‑148 (MQ=255) aCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑Tc > 8:51414/1‑146 (MQ=255) cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTg > 7:253003/1‑138 (MQ=255) cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTg < 8:253003/138‑1 (MQ=255) ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg < 7:30216‑M2/149‑100 (MQ=255) ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg < 7:251235‑M2/149‑100 (MQ=255) gACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑gg < 7:319808/74‑1 (MQ=255) gACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑gg > 8:319808/1‑74 (MQ=255) gACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCa > 4:336230/1‑149 (MQ=255) gcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGAt > 5:191616/1‑130 (MQ=255) gcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGAt < 6:191616/130‑1 (MQ=255) gATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCctc > 6:75675/1‑149 (MQ=255) tGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgc < 5:252029/115‑1 (MQ=255) tGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgc > 6:252029/1‑115 (MQ=255) tAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGc > 3:323696/1‑149 (MQ=255) aaGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGcc > 8:127782/1‑149 (MQ=255) aaGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGc > 6:199104/1‑148 (MQ=255) gggCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg < 5:75675/149‑1 (MQ=255) ggcggcGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAgg > 5:189089/1‑149 (MQ=255) gcAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgca > 1:227721/1‑102 (MQ=255) gcAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTgca < 2:227721/102‑1 (MQ=255) gcAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCacga < 7:127782/149‑1 (MQ=255) gcAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCCGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCacga < 3:113864/149‑1 (MQ=255) ccGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCACTCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACgg < 1:260118/149‑1 (MQ=255) gtcggtcgTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATg > 4:1878/1‑149 (MQ=255) gtcgtaggagcgggttcacccgcgaagcggccggcaatgcgattacatctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccctgctcgctgccatacaagcgcaacgccaggcaaaacggtg > 8:251235‑M2/1‑3 (MQ=255) gtcgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccctgctcgctgccatacaagcgcaacgccaggcaaaacggtg > 8:30216‑M2/1‑3 (MQ=255) | CAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCA‑GGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCA‑TCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGC > NC_002947/2057716‑2058007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |