New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2079256 =	49 (0.870)	3 (0.060)	3/240	NT	6.8%	intergenic (‑55/‑75)	PP_1855/earP	hypothetical protein/EF‑P arginine 32 rhamnosyl‑transferase
	?	NC_002947	2079298 =	37 (0.700)					intergenic (‑97/‑33)	PP_1855/earP	hypothetical protein/EF‑P arginine 32 rhamnosyl‑transferase

TGGCCATGGCGCCTAGCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGC  >  NC_002947/2079111‑2079397                                                                                                                                                  |                                                                                                                                              tGGCCATGGCGCCTAGCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCt                                                                                                                                            <  7:141980/149‑1 (MQ=255)   cgcaccgccaggccgtgctcggccaccaactgccgggccaggcgccaagtcacgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTgc                                                                                                                                          >  6:99361‑M1/144‑149 (MQ=255)    gcaccgccaggccgtgctcggccaccaactgccgggccaggcgccaagtcacgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTgcg                                                                                                                                         >  7:79391‑M1/143‑149 (MQ=255)     cATGGCGCCTAGCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTgcgc                                                                                                                                        <  5:316696/149‑1 (MQ=255)     cATGGCGCCTAGCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTgcg                                                                                                                                         >  7:192087/1‑148 (MQ=255)                gCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGTGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCtttt                                                                                                                              <  5:288682/148‑1 (MQ=255)                gCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCtttt                                                                                                                              <  2:102338/148‑1 (MQ=255)                gCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCtttt                                                                                                                              <  2:224646/148‑1 (MQ=255)                 ccAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGt                                                                                                                            >  2:196573/1‑149 (MQ=255)                  cAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGt                                                                                                                            >  1:180874/1‑148 (MQ=255)                        cccAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAgcgc                                                                                                                      >  4:165787/1‑148 (MQ=255)                         ccAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGt                                                                                                                            >  4:334925/1‑141 (MQ=255)                         ccAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGt                                                                                                                            <  3:334925/141‑1 (MQ=255)                           aaGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAAt                                                                                                                  <  1:1021/149‑1 (MQ=255)                               cAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTAt                                                                                                              <  1:196573/149‑1 (MQ=255)                                      caTGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGa                                                                                                       <  4:44099/149‑1 (MQ=255)                                         caggcgccaagtcacgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAtt                                                                                                    >  2:318603‑M1/106‑149 (MQ=255)                                             aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgc                                                                                                 <  3:165787/148‑1 (MQ=255)                                             aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTc                                                                                                   <  7:267102/146‑1 (MQ=255)                                             aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTc                                                                                                   >  8:267102/1‑146 (MQ=255)                                              acggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTGTGCTGCGCAGGTGCTTTTGTCAGCGCGAATTTATGCGCAGAATTCGCgg                                                                                               >  4:39563/1‑149 (MQ=255)                                                ggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGtt                                                                                             >  4:118302/1‑149 (MQ=255)                                                   aacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGCCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCA‑TTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTg                                                                                         >  6:122821/1‑149 (MQ=255)                                                      acgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgcg                                                                                                >  7:105022‑M1/93‑140 (MQ=255)                                                      acgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgcg                                                                                                <  8:105022‑M1/48‑1 (MQ=255)                                                               gTGATCTTCAATTCAGGGTTGCGCGGCATGGCAGCCTCCTGTCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACg                                                                               <  7:119925/148‑1 (MQ=255)                                                                     ttCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAggg                                                                         >  3:153850/1‑148 (MQ=255)                                                                       cAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAggg                                                                         <  4:153850/146‑1 (MQ=255)                                                                       cAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAg                                                                           <  2:209692/144‑1 (MQ=255)                                                                              cGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGaaa                                                               <  3:118302/149‑1 (MQ=255)                                                                              cGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGa                                                                 >  2:79449/1‑147 (MQ=255)                                                                                ggggCCCGGCATGGCAGCCTCCGGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGGGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGc                                                             <  2:304176/147‑1 (MQ=255)                                                                                   gcgcGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCAc                                                          >  4:120494/1‑149 (MQ=255)                                                                                   gcgcGGCATGGCAGCCTCCTGGCAGCGGGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCCCGGGAGGGGCGCATGCACGcccc                                                          >  4:125600/1‑147 (MQ=255)                                                                                       ggCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTgg                                                      <  3:120494/149‑1 (MQ=255)                                                                                       ggCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGGTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTgg                                                      <  3:125600/149‑1 (MQ=255)                                                                                          aTGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGa                                                    >  4:154576/1‑148 (MQ=255)                                                                                           tGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAt                                                                                                     <  4:314361/98‑1 (MQ=255)                                                                                           tGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAt                                                                                                     >  3:314361/1‑98 (MQ=255)                                                                                               aGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACAtctt                                              <  8:192087/149‑1 (MQ=255)                                                                                                     ctGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCA‑TTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCa                                         <  5:122821/147‑1 (MQ=255)                                                                                                       ggCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcg                                      >  1:172269/1‑149 (MQ=255)                                                                                                                gTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtcgt                                  >  2:318810/1‑144 (MQ=255)                                                                                                                gTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtcgt                                  <  1:318810/144‑1 (MQ=255)                                                                                                                    gggggCATTCTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCTCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGGCGTCGACAACTa                         <  3:39563/149‑1 (MQ=255)                                                                                                                          aTTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGCCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGa                   >  6:367281/1‑149 (MQ=255)                                                                                                                              tCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATAtt               >  7:142499/1‑149 (MQ=255)                                                                                                                                      gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc       >  2:219585/1‑149 (MQ=255)                                                                                                                                      gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc       <  8:142499/149‑1 (MQ=255)                                                                                                                                      gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc       >  2:188617/1‑149 (MQ=255)                                                                                                                                      gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTACACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTAAGGCTAAATTAGCGTGAc       >  8:236092/1‑149 (MQ=255)                                                                                                                                          gggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTg    <  7:39633/148‑1 (MQ=255)                                                                                                                                           ggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGgc  >  8:78586/1‑149 (MQ=255)                                                                                                                                           ggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTACACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGgc  <  7:236092/149‑1 (MQ=255)                                                                                                                                           ggCATTTTTCTGCGCAGGTGCTTTTGCCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTgg   <  5:367281/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              TGGCCATGGCGCCTAGCCAAAGGCCCAAGGCAACGCACATGATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGC  >  NC_002947/2079111‑2079397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.