New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2079256 =	49 (0.870)	3 (0.060)	3/240	NT	6.8%	intergenic (‑55/‑75)	PP_1855/earP	hypothetical protein/EF‑P arginine 32 rhamnosyl‑transferase
	?	NC_002947	2079298 =	37 (0.700)					intergenic (‑97/‑33)	PP_1855/earP	hypothetical protein/EF‑P arginine 32 rhamnosyl‑transferase

GATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCTGGCGGTGCG  >  NC_002947/2079151‑2079440                                                                                                                                                    |                                                                                                                                                caggcgccaagtcacgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAtt                                                                                                                                                >  2:318603‑M1/106‑149 (MQ=255)     aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgc                                                                                                                                             <  3:165787/148‑1 (MQ=255)     aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTc                                                                                                                                               >  8:267102/1‑146 (MQ=255)     aacggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTc                                                                                                                                               <  7:267102/146‑1 (MQ=255)      acggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTGTGCTGCGCAGGTGCTTTTGTCAGCGCGAATTTATGCGCAGAATTCGCgg                                                                                                                                           >  4:39563/1‑149 (MQ=255)        ggcaacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGtt                                                                                                                                         >  4:118302/1‑149 (MQ=255)           aacggcTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGCCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCA‑TTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTg                                                                                                                                     >  6:122821/1‑149 (MQ=255)              acgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgcg                                                                                                                                            >  7:105022‑M1/93‑140 (MQ=255)              acgccaatatcgccgtagttgtcgacgacgctgcagaagatgtcccaggtggctttcatgcgcccctcccgtgcgggtgcaaaaaccgcgaaTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTcgcg                                                                                                                                            <  8:105022‑M1/48‑1 (MQ=255)                       gTGATCTTCAATTCAGGGTTGCGCGGCATGGCAGCCTCCTGTCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACg                                                                                                                           <  7:119925/148‑1 (MQ=255)                             ttCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAggg                                                                                                                     >  3:153850/1‑148 (MQ=255)                               cAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAggg                                                                                                                     <  4:153850/146‑1 (MQ=255)                               cAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAg                                                                                                                       <  2:209692/144‑1 (MQ=255)                                      cGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGaaa                                                                                                           <  3:118302/149‑1 (MQ=255)                                      cGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGa                                                                                                             >  2:79449/1‑147 (MQ=255)                                        ggggCCCGGCATGGCAGCCTCCGGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGGGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGc                                                                                                         <  2:304176/147‑1 (MQ=255)                                           gcgcGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCAc                                                                                                      >  4:120494/1‑149 (MQ=255)                                           gcgcGGCATGGCAGCCTCCTGGCAGCGGGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCCCGGGAGGGGCGCATGCACGcccc                                                                                                      >  4:125600/1‑147 (MQ=255)                                               ggCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTgg                                                                                                  <  3:120494/149‑1 (MQ=255)                                               ggCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGGTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTgg                                                                                                  <  3:125600/149‑1 (MQ=255)                                                  aTGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGa                                                                                                >  4:154576/1‑148 (MQ=255)                                                   tGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAt                                                                                                                                                 <  4:314361/98‑1 (MQ=255)                                                   tGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAAt                                                                                                                                                 >  3:314361/1‑98 (MQ=255)                                                       aGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACAtctt                                                                                          <  8:192087/149‑1 (MQ=255)                                                             ctGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCA‑TTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCa                                                                                     <  5:122821/147‑1 (MQ=255)                                                               ggCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcg                                                                                  >  1:172269/1‑149 (MQ=255)                                                                        gTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtcgt                                                                              >  2:318810/1‑144 (MQ=255)                                                                        gTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtcgt                                                                              <  1:318810/144‑1 (MQ=255)                                                                            gggggCATTCTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCTCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGGCGTCGACAACTa                                                                     <  3:39563/149‑1 (MQ=255)                                                                                  aTTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGCCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGa                                                               >  6:367281/1‑149 (MQ=255)                                                                                      tCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATAtt                                                           >  7:142499/1‑149 (MQ=255)                                                                                              gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc                                                   <  8:142499/149‑1 (MQ=255)                                                                                              gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc                                                   >  2:219585/1‑149 (MQ=255)                                                                                              gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGAc                                                   >  2:188617/1‑149 (MQ=255)                                                                                              gcTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTACACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTAAGGCTAAATTAGCGTGAc                                                   >  8:236092/1‑149 (MQ=255)                                                                                                  gggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTg                                                <  7:39633/148‑1 (MQ=255)                                                                                                   ggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGgc                                              >  8:78586/1‑149 (MQ=255)                                                                                                   ggCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTACACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGgc                                              <  7:236092/149‑1 (MQ=255)                                                                                                   ggCATTTTTCTGCGCAGGTGCTTTTGCCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTgg                                               <  5:367281/148‑1 (MQ=255)                                                                                                    cgcgaattctgcgcataaattggcgctgacaaaagcacctgcgcagaaTTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGt                                                      >  7:105022‑M2/49‑140 (MQ=255)                                                                                                    cgcgaattctgcgcataaattggcgctgacaaaagcacctgcgcagaaTTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGt                                                      <  8:105022‑M2/92‑1 (MQ=255)                                                                                                        aattctgcgcataaattggcgctgacaaaagcacctgcgcagaaTTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTg                                         >  2:318603‑M2/45‑149 (MQ=255)                                                                                                            CTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑Gcc                                     >  7:78586‑M1/1‑148 (MQ=255)                                                                                                                   ggTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GTCCGGCAGtt                             >  8:171021/1‑149 (MQ=255)                                                                                                                       cTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtc                                                                                <  4:146898/95‑1 (MQ=255)                                                                                                                       cTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGcgtc                                                                                >  3:146898/1‑95 (MQ=255)                                                                                                                            gTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGcc                      >  4:199237/1‑147 (MQ=255)                                                                                                                             tCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAACCCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGAGATAGGc                                                        >  8:188405/1‑113 (MQ=255)                                                                                                                                     aaTTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCt           >  3:289077/1‑149 (MQ=255)                                                                                                                                         tATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTGCGCCCGGCAGTTGGTGGCCGAGCACGGCCTgg         <  1:219585/148‑1 (MQ=255)                                                                                                                                         tATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCATGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCTGGc        <  1:79449/148‑1 (MQ=255)                                                                                                                                             cgcagaaTTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCTGGCGGTgc   >  7:79391‑M2/8‑149 (MQ=255)                                                                                                                                              gcagaaTTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCTGGCGGTgcg  >  6:99361‑M2/7‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                GATCAACGGCAACGGCTTGAGAGTGATCTTCAATTCACGGTGGCGCGGCATGGCAGCCTCCTGGCAGCGTGGTAGGGGGGCATTGTCGCATGCGCTTGGGCATTTTTCTGCGCAGGTGCTTTTGTCAGCGCCAATTTATGCGCAGAATTCGCGGTTTTTGCACCCGCACGGGAGGGGCGCATGAAAGCCACCTGGGACATCTTCTGCAGCGTCGTCGACAACTACGGCGATATTGGCGTGACTTGGCGCCTG‑GCCCGGCAGTTGGTGGCCGAGCACGGCCTGGCGGTGCG  >  NC_002947/2079151‑2079440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.