New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3631641 =	41 (0.730)	3 (0.050)	3/252	NT	7.4%	coding (535/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	3631699 =	35 (0.630)					coding (593/1368 nt)	PP_5590	hypothetical protein

CAGTCGGTGTACGACGCCACCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGT  >  NC_002947/3631494‑3631788                                                                                                                                                    |                                                                                                                                                    cAGTCGGTGTACGACGCCACCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCg                                                                                                                                                    >  2:32293/1‑149 (MQ=255)  gccggtaatggcctccccggcacgcaggggcgggccgtcgttggtcatgcggatggaccagaacacacccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgcCGt                                                                                                                                                   <  4:123162‑M1/3‑1 (MQ=255)   gTCGGTGTACGACGCCACCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGtt                                                                                                                                                  <  5:100976/149‑1 (MQ=255)       gtgtACGACGCCACCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCg                                                                                                                                              >  2:242929/1‑149 (MQ=255)            cgaggCCACCCTCGCAATCGCCACCAGCGGCAAGGTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGt                                                                                                                                          <  8:84346/148‑1 (MQ=255)                   aCCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTg                                                                                                                                  >  3:25332/1‑149 (MQ=255)                     ccTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGc                                                                                                                                >  7:339295/1‑149 (MQ=255)                         gCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGc                                                                                                                            >  8:258749/1‑149 (MQ=255)                          ccAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGcc                                                                                                                           <  1:242929/149‑1 (MQ=255)                             aCGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGc                                                                                                                        >  7:102315/1‑149 (MQ=255)                             aCGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCCGGCACGCCAGc                                                                                                                        >  8:322286/1‑149 (MQ=255)                              cGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCt                                                                                                                       <  5:141356/149‑1 (MQ=255)                                   ccaGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAAt                                                                                                                  <  2:27322/149‑1 (MQ=255)                                   ccaGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGCCGGGGTGCGTCCTGGCACGCCAGCTTCAAt                                                                                                                  <  1:32293/149‑1 (MQ=255)                                                      cGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCAccgcc                                                                                                >  1:95156/1‑148 (MQ=255)                                                       ggCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGTCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGa                                                                                              >  7:301878/1‑149 (MQ=255)                                                         ccccGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGc                                                                                                                                        <  6:253620/105‑1 (MQ=255)                                                         ccccGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGc                                                                                                                                        >  5:253620/1‑105 (MQ=255)                                                          cccGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTAc                                                                                                            <  1:142727/132‑1 (MQ=255)                                                               cgGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGc                                                                                      <  8:339295/149‑1 (MQ=255)                                                               cgGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCCGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGc                                                                                      <  7:322286/149‑1 (MQ=255)                                                                   cacccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgtCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGt                                                                                  >  6:40106‑M1/82‑149 (MQ=255)                                                                      ccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgcCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACgg                                                                                           <  2:217871‑M1/59‑1 (MQ=255)                                                                      ccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgcCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACgg                                                                                           >  1:217871‑M1/79‑137 (MQ=255)                                                                         cccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCa                                                                             >  1:309229/1‑148 (MQ=255)                                                                         cccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAc                                                                            <  2:95156/149‑1 (MQ=255)                                                                          ccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAc                                                                            >  3:119897/1‑148 (MQ=255)                                                                           cGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCAccgccg                                                                                               <  5:149817/128‑1 (MQ=255)                                                                           cGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCAccgccg                                                                                               >  6:149817/1‑128 (MQ=255)                                                                           cGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAcc                                                                           >  3:338755/1‑148 (MQ=255)                                                                             aaGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAAt                                                                        <  4:25332/149‑1 (MQ=255)                                                                                  gcATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTc                                                                   >  3:123162/1‑149 (MQ=255)                                                                                       cggcggCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCggg                                                              <  6:298930/149‑1 (MQ=255)                                                                                               tCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTg                                                      <  6:17341/149‑1 (MQ=255)                                                                                                   gTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGa                                                  <  8:102315/149‑1 (MQ=255)                                                                                                    ttCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATGTGCAGAt                                                 >  6:218354/1‑149 (MQ=255)                                                                                                        cGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGccc                                             >  6:95473/1‑149 (MQ=255)                                                                                                                         gTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTg                             >  4:64156/1‑148 (MQ=255)                                                                                                                         gTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTg                             <  3:64156/148‑1 (MQ=255)                                                                                                                                  aTGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGa                   >  2:18016/1‑149 (MQ=255)                                                                                                                                   tgtgGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGa                   >  2:246409/1‑148 (MQ=255)                                                                                                                                       gAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAgg              <  7:19138/149‑1 (MQ=255)                                                                                                                                        aaTCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAggg             >  8:5296/1‑149 (MQ=255)                                                                                                                                         aTCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgt            <  7:258749/149‑1 (MQ=255)                                                                                                                                          tCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtg           >  6:139754/1‑149 (MQ=255)                                                                                                                                          tCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtg           >  4:108233/1‑149 (MQ=255)                                                                                                                                            aCCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtgtg         <  7:5296/149‑1 (MQ=255)                                                                                                                                               tgctgcGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTc      >  4:4201/1‑149 (MQ=255)                                                                                                                                                 ctgcGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTc      <  1:18016/147‑1 (MQ=255)                                                                                                                                                    CGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGt  >  8:221227‑M1/1‑148 (MQ=255)                                                                                                                                                    CGTTGGCGGGGTGCGGCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTgg   >  8:301878‑M1/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CAGTCGGTGTACGACGCCACCCTCGCCAACGCCACCAGCGGCAAGCTGGTGGACGGCCCCGCCGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGT  >  NC_002947/3631494‑3631788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.