New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3631641 =	41 (0.730)	3 (0.050)	3/252	NT	7.4%	coding (535/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	3631699 =	35 (0.630)					coding (593/1368 nt)	PP_5590	hypothetical protein

CGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGCCATTACCGGC  >  NC_002947/3631556‑3631844                                                                                                                                                |                                                                                                                                                  cgGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGc                                                                                                                                              <  8:339295/149‑1 (MQ=255) cgGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCCGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGc                                                                                                                                              <  7:322286/149‑1 (MQ=255)     cacccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgtCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGt                                                                                                                                          >  6:40106‑M1/82‑149 (MQ=255)        ccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgcCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACgg                                                                                                                                                   >  1:217871‑M1/79‑137 (MQ=255)        ccttgtcgccactgccacccggcaggtaccagggcatctgcaaatcggcccgcgagtcattggtgagcacgtgcttgcCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACgg                                                                                                                                                   <  2:217871‑M1/59‑1 (MQ=255)           cccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCa                                                                                                                                     >  1:309229/1‑148 (MQ=255)           cccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAc                                                                                                                                    <  2:95156/149‑1 (MQ=255)            ccGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAc                                                                                                                                    >  3:119897/1‑148 (MQ=255)             cGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCAcc                                                                                                                                   >  3:338755/1‑148 (MQ=255)               aaGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAAt                                                                                                                                <  4:25332/149‑1 (MQ=255)                    gcATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTc                                                                                                                           >  3:123162/1‑149 (MQ=255)                         cggcggCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCggg                                                                                                                      <  6:298930/149‑1 (MQ=255)                                 tCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTg                                                                                                              <  6:17341/149‑1 (MQ=255)                                     gTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGa                                                                                                          <  8:102315/149‑1 (MQ=255)                                      ttCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATGTGCAGAt                                                                                                         >  6:218354/1‑149 (MQ=255)                                          cGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGccc                                                                                                     >  6:95473/1‑149 (MQ=255)                                                           gTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTg                                                                                     <  3:64156/148‑1 (MQ=255)                                                           gTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTg                                                                                     >  4:64156/1‑148 (MQ=255)                                                                    aTGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGa                                                                           >  2:18016/1‑149 (MQ=255)                                                                     tgtgGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGa                                                                           >  2:246409/1‑148 (MQ=255)                                                                         gAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAgg                                                                      <  7:19138/149‑1 (MQ=255)                                                                          aaTCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAggg                                                                     >  8:5296/1‑149 (MQ=255)                                                                           aTCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgt                                                                    <  7:258749/149‑1 (MQ=255)                                                                            tCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtg                                                                   >  4:108233/1‑149 (MQ=255)                                                                            tCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtg                                                                   >  6:139754/1‑149 (MQ=255)                                                                            acgtgcttgccgtcggcggtggtcaggtactgattgaagctggcgtgccaggacgcaccccgccaacgACAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtg                                                                   >  6:40106‑M2/69‑149 (MQ=255)                                                                              aCCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGgtgtg                                                                 <  7:5296/149‑1 (MQ=255)                                                                                 tgctgcGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTc                                                              >  4:4201/1‑149 (MQ=255)                                                                                   ctgcGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTc                                                              <  1:18016/147‑1 (MQ=255)                                                                                     ccgtcggcggtggtcaggtactgattgaagctggcgtgccaggacgcaccccgccaacgGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAgg                                                                      <  2:217871‑M2/78‑1 (MQ=255)                                                                                     ccgtcggcggtggtcaggtactgattgaagctggcgtgccaggacgcaccccgccaacgGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAgg                                                                      >  1:217871‑M2/60‑137 (MQ=255)                                                                                      CGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGt                                                          >  8:221227‑M1/1‑148 (MQ=255)                                                                                      CGTTGGCGGGGTGCGGCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTgg                                                           >  8:301878‑M1/1‑147 (MQ=255)                                                                                                 tGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGa                                              <  5:139754/149‑1 (MQ=255)                                                                                                                     tCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTg                          >  6:39384/1‑149 (MQ=255)                                                                                                                              aCCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCgg                  <  5:39384/148‑1 (MQ=255)                                                                                                                               ccTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCggg                 <  5:95473/148‑1 (MQ=255)                                                                                                                               ccTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTGCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCggg                 <  3:4201/148‑1 (MQ=255)                                                                                                                                  gACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGAtt                                                                                                                >  2:235439/1‑50 (MQ=255)                                                                                                                                  gACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGAtt                                                                                                                <  1:235439/50‑1 (MQ=255)                                                                                                                                   accaccGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAg              <  2:309229/147‑1 (MQ=255)                                                                                                                                   accaccGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGc            <  1:246409/149‑1 (MQ=255)                                                                                                                                     caccGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGCCa          >  1:197569/1‑149 (MQ=255)                                                                                                                                           cgACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGCCATTACCg    >  3:135847/1‑149 (MQ=255)                                                                                                                                             acgGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGCCATTACCGGc  <  4:123162‑M2/146‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  CGGCCCCATGCCCGAAGGCGCATCCGGCGGCATCCCGTTCCCGATCCCGGCCAATGGCGTGGAAGCCATGTGGAATCACCTGCTGCGTTGGCGGGGTGCGTCCTGGCACGCCAGCTTCAATCAGTACCTGACCACCGCCGACGGCAAGCACGTGCTCACCAATGACTCGCGGGCCGATTTGCAGATGCCCTGGTACCTGCCGGGTGGCAGTGGCGACAAGGGTGTGTTCTGGTCCATCCGCATGACCAACGACGGCCCGCCCCTGCGTGCCGGGGAGGCCATTACCGGC  >  NC_002947/3631556‑3631844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.