New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3903215 =	29 (0.510)	3 (0.060)	3/246	NT	9.1%	coding (1528/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3903252 =	32 (0.590)					coding (1491/1593 nt)	ilvA‑I	threonine deaminase

GCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCC  >  NC_002947/3903067‑3903361                                                                                                                                                     |                                                                                                                                                   gccctgccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTc                                                                                                                                                    <  6:283011/149‑1 (MQ=255)    gcgggtactgcgcttcgagttccccgaacggccaggggcgttgctggggtttctggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAg                                                                                                                                                 >  2:175448‑M1/146‑149 (MQ=255)       ccctTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCatc                                                                                                                                                <  4:53870/147‑3 (MQ=255)         tactgcgcttcgagttccccgaacggccaggggcgttgctggggtttctggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGc                                                                                                                                                <  2:166555‑M1/5‑1 (MQ=255)         tactgcgcttcgagttccccgaacggccaggggcgttgctggggtttctggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGc                                                                                                                                                >  1:166555‑M1/141‑145 (MQ=255)             gggcggggcgGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACgg                                                                                                                                        <  1:291040/149‑1 (MQ=255)             gggcggggcgGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACg                                                                                                                                         <  2:98537/148‑1 (MQ=255)               gcggggcggTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACgggt                                                                                                                                      <  3:67733/149‑3 (MQ=255)                      ggTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGc                                                                                                                               >  1:225664/1‑149 (MQ=255)                      ggTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGc                                                                                                                               <  1:90770/149‑1 (MQ=255)                              aGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGt                                                                                                                       >  4:48682/1‑149 (MQ=255)                              aGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGt                                                                                                                       <  2:267714/149‑1 (MQ=255)                                     acaGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTgg                                                                                                                <  7:65876/149‑1 (MQ=255)                                        ggcgttgctggggtttctggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCAc                                                                                                             >  3:333235‑M1/110‑149 (MQ=255)                                                         tggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTgg                                                                                                                >  8:156751‑M1/93‑129 (MQ=255)                                                         tggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTgg                                                                                                                <  7:156751‑M1/37‑1 (MQ=255)                                                            gCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGaa                                                                                              >  1:326033/1‑144 (MQ=255)                                                            gCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGaa                                                                                              <  2:326033/144‑1 (MQ=255)                                                                                     cAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCg                                                                >  3:50710/1‑149 (MQ=255)                                                                                         ccAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCACGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTaa                                                            >  3:284520/1‑149 (MQ=255)                                                                                           aGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATg                                                          >  2:159154/1‑149 (MQ=255)                                                                                            ggAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATgg                                                         <  2:225664/149‑1 (MQ=255)                                                                                                      gTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCcgc                                                                                       >  2:95297/1‑109 (MQ=255)                                                                                                      gTACGCCGGGTTGTCAGTCTCGTCCCAGTACCCGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCcgc                                                                                       <  1:95297/109‑1 (MQ=255)                                                                                                           ccGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGaa                                                       <  8:241515/136‑1 (MQ=255)                                                                                                           ccGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGaa                                                       >  7:241515/1‑136 (MQ=255)                                                                                                                ttGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACg                                     <  3:48682/149‑1 (MQ=255)                                                                                                                    cAGTCTCGTCCCAGTACCGGTACCCCAACTCGTCCAGCGTAGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTg                                 >  1:9491/1‑149 (MQ=255)                                                                                                                     aGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGCTAATGGAACAGGCTGATGTTCCAACGCTTGc                                >  7:243007/1‑149 (MQ=255)                                                                                                                      gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGcc                               >  3:49235/1‑149 (MQ=255)                                                                                                                      gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGcc                               >  4:78099/1‑149 (MQ=255)                                                                                                                      gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACAATGGTTGCGGTAATGGCACAGGCTGATGTTCCAACGCTTGcc                               >  8:60491/1‑149 (MQ=255)                                                                                                                               cAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTc                      >  2:83507/1‑149 (MQ=255)                                                                                                                                       gTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAcc              >  2:215600/1‑149 (MQ=255)                                                                                                                                          ccccATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTAGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAccc             >  1:52810/1‑147 (MQ=255)                                                                                                                                              aTCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGc                                                                                                 <  7:100116/59‑1 (MQ=255)                                                                                                                                              aTCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGc                                                                                                 >  8:100116/1‑59 (MQ=255)                                                                                                                                                  cGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGcc   >  3:52216/1‑149 (MQ=255)                                                                                                                                                   gTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGccc  >  5:306387/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCCCTGCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCC  >  NC_002947/3903067‑3903361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.