New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3903215 =	29 (0.510)	3 (0.060)	3/246	NT	9.1%	coding (1528/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3903252 =	32 (0.590)					coding (1491/1593 nt)	ilvA‑I	threonine deaminase

GGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTACCCGC  >  NC_002947/3903106‑3903396                                                                                                                                                   |                                                                                                                                                 ggcgttgctggggtttctggagcggttgggcaagcgttggaacatcagcctgttccattaccgcaaccatggtgcggcggaggcgcgggtgttcgctgccttggaagtgCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCAc                                                                                                                                                >  3:333235‑M1/110‑149 (MQ=255)                     gCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGaa                                                                                                                                 >  1:326033/1‑144 (MQ=255)                     gCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGaa                                                                                                                                 <  2:326033/144‑1 (MQ=255)                                              cAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCg                                                                                                   >  3:50710/1‑149 (MQ=255)                                                  ccAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCACGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTaa                                                                                               >  3:284520/1‑149 (MQ=255)                                                    aGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATg                                                                                             >  2:159154/1‑149 (MQ=255)                                                     ggAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATgg                                                                                            <  2:225664/149‑1 (MQ=255)                                                               gTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCcgc                                                                                                                          >  2:95297/1‑109 (MQ=255)                                                               gTACGCCGGGTTGTCAGTCTCGTCCCAGTACCCGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCcgc                                                                                                                          <  1:95297/109‑1 (MQ=255)                                                                    ccGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGaa                                                                                          <  8:241515/136‑1 (MQ=255)                                                                    ccGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGaa                                                                                          >  7:241515/1‑136 (MQ=255)                                                                         ttGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACg                                                                        <  3:48682/149‑1 (MQ=255)                                                                             cAGTCTCGTCCCAGTACCGGTACCCCAACTCGTCCAGCGTAGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTg                                                                    >  1:9491/1‑149 (MQ=255)                                                                              aGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGCTAATGGAACAGGCTGATGTTCCAACGCTTGc                                                                   >  7:243007/1‑149 (MQ=255)                                                                               gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGcc                                                                  >  3:49235/1‑149 (MQ=255)                                                                               gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGcc                                                                  >  4:78099/1‑149 (MQ=255)                                                                               gTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACAATGGTTGCGGTAATGGCACAGGCTGATGTTCCAACGCTTGcc                                                                  >  8:60491/1‑149 (MQ=255)                                                                                        cAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTc                                                         >  2:83507/1‑149 (MQ=255)                                                                                                gTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAcc                                                 >  2:215600/1‑149 (MQ=255)                                                                                                   ccccATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTAGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAccc                                                >  1:52810/1‑147 (MQ=255)                                                                                                       aTCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGc                                                                                                                                    >  8:100116/1‑59 (MQ=255)                                                                                                       aTCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGc                                                                                                                                    <  7:100116/59‑1 (MQ=255)                                                                                                           gtgccagcggacgagttggcgggcttgccgtcgacgctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGcc                                      >  3:333235‑M2/41‑149 (MQ=255)                                                                                                           cGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGcc                                      >  3:52216/1‑149 (MQ=255)                                                                                                            gTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGccc                                     >  5:306387/1‑149 (MQ=255)                                                                                                              ccagcggacgagttggcgggcttgccgtcgacgctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCa                                                       >  8:156751‑M2/38‑129 (MQ=255)                                                                                                              ccagcggacgagttggcgggcttgccgtcgacgctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCa                                                       <  7:156751‑M2/92‑1 (MQ=255)                                                                                                               CAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCt                                   >  4:52216‑M1/1‑148 (MQ=255)                                                                                                               CAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTg                                  >  1:83507‑M1/1‑149 (MQ=255)                                                                                                                  CGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGcc                               >  4:284520‑M1/1‑149 (MQ=255)                                                                                                                  CGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCACTCCAGAAACCCCAGCAACGCCCCTGGcc                               >  1:159154‑M1/1‑149 (MQ=255)                                                                                                                    tCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGt                             >  8:169843/1‑149 (MQ=255)                                                                                                                       aCGGCAAGCCCGCCGACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAc                                                  <  6:237465/125‑1 (MQ=255)                                                                                                                       aCGGCAAGCCCGCCGACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAc                                                  >  5:237465/1‑125 (MQ=255)                                                                                                                         ggCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCggg                        <  7:169843/149‑1 (MQ=255)                                                                                                                               cccGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAcccc                                               <  3:170425/120‑1 (MQ=255)                                                                                                                               cccGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAAcccc                                               >  4:170425/1‑120 (MQ=255)                                                                                                                                  gCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGaa               <  3:78099/149‑1 (MQ=255)                                                                                                                                    cAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAgc             <  6:306387/149‑1 (MQ=255)                                                                                                                                    cAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAgc             >  2:43166/1‑149 (MQ=255)                                                                                                                                        tCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAg         >  5:69406/1‑149 (MQ=255)                                                                                                                                            ccGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTAcc     <  4:50710/149‑1 (MQ=255)                                                                                                                                              gctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTa       <  2:166555‑M2/140‑1 (MQ=255)                                                                                                                                              gctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTa       >  1:166555‑M2/6‑145 (MQ=255)                                                                                                                                               ctggCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTACCCGc  >  2:175448‑M2/5‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCGGTACCCCATCTCGTCCAGCGTCGACGGCAAGCCCGCCAACTCGTCCGCTGGCACTTCCAAGGCAGCGAACACCCGCGCCTCCGCCGCACCATGGTTGCGGTAATGGAACAGGCTGATGTTCCAACGCTTGCCCAACCGCTCCAGAAACCCCAGCAACGCCCCTGGCCGTTCGGGGAACTCGAAGCGCAGTACCCGC  >  NC_002947/3903106‑3903396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.