New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4117855 | 43 (0.760) | 5 (0.090) | 5/244 | NT | 11.3% | coding (545/2256 nt) | PP_3622 | isoquinoline 1‑oxidoreductase subunit beta |
? | NC_002947 | = 4117881 | 38 (0.710) | coding (571/2256 nt) | PP_3622 | isoquinoline 1‑oxidoreductase subunit beta |
GCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG > NC_002947/4117720‑4118002 | gcATGAGCTACCCCACCATGCGCCGTCTGGGCGCCCTCGCCCGCGGCATGCAGCTGCAGGCGGGCGCCGAACACCTCGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCAGTAccc > 4:232470/1‑149 (MQ=255) aTGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTa > 1:289566/1‑149 (MQ=255) ccccACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGc > 8:251571/1‑149 (MQ=255) cccACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaac > 2:266808‑M1/1‑125 (MQ=255) caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACg > 3:353300/1‑140 (MQ=255) caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACg < 4:353300/140‑1 (MQ=255) caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTgg > 4:246709/1‑149 (MQ=255) aCCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGc < 2:111322‑M2/149‑2 (MQ=255) cATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccg > 5:364264‑M2/1‑146 (MQ=255) cgcCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcg < 1:70665‑M1/149‑34 (MQ=255) gcCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑Tcgc < 7:251571/149‑1 (MQ=255) gTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGcc < 6:98828/149‑1 (MQ=255) tCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTAcc > 4:84788/1‑123 (MQ=255) tCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTAcc < 3:84788/123‑1 (MQ=255) gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACCTACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATgg > 4:300576/1‑149 (MQ=255) gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATg > 4:295636/1‑148 (MQ=255) ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGa > 6:33075/1‑149 (MQ=255) ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGa > 3:3007/1‑149 (MQ=255) gcgcgcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtac < 1:266808‑M1/149‑44 (MQ=255) gcgcgcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGAc > 4:16204/1‑149 (MQ=255) gcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGc < 5:33075/149‑1 (MQ=255) tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCg > 4:223512/1‑149 (MQ=255) tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCAAGGACCTGCCg > 7:245514/1‑149 (MQ=255) gCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGt > 7:219020/1‑149 (MQ=255) ggggCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGccc < 6:348588/149‑1 (MQ=255) gctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgt > 6:226000‑M1/1‑87 (MQ=255) gctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgt < 5:226000‑M1/121‑35 (MQ=255) ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGc < 3:300576/149‑1 (MQ=255) ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGc < 3:295636/149‑1 (MQ=255) gggcgCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGc > 5:341713/1‑149 (MQ=255) cgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgc < 6:91707/149‑1 (MQ=255) ccGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACGC‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGCCCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcg > 1:250719/1‑149 (MQ=255) cGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑CGGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcgc > 1:250474/1‑149 (MQ=255) ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGCCCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca < 2:250719/149‑1 (MQ=255) ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca < 3:223512/149‑1 (MQ=255) ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagc < 4:3007/147‑1 (MQ=255) gtgtACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCa > 1:284201/1‑96 (MQ=255) gtgtACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCa < 2:284201/96‑1 (MQ=255) gTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg < 8:219020/149‑1 (MQ=255) gTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg < 3:16204/149‑1 (MQ=255) tGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt < 8:110078/148‑1 (MQ=255) tGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt > 7:110078/1‑148 (MQ=255) gAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACAACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg > 2:52189/1‑148 (MQ=255) atcTTTCTACCACAA‑C‑GGGTAACGTACTAAAAACCACGACCGGAAGTTTCGTACCCTACGG‑GGTTCTGGGCGGTTGGCTGCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg < 1:111322/146‑1 (MQ=255) gggTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACgccgcc > 3:118675/1‑149 (MQ=255) aCGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGAt < 3:246709/149‑1 (MQ=255) gtagtaCATACCACGACCGGACGTTCCGTACCCTACGGTTGACATGGCCGG‑TCGCGCCATGGCCATCCCGTTGCCCGACCCGGCCAGCGTCAAGCTGCCCGACCCCAGCCAGTTTCGCTGGATTGGAAACCCCGTACGCCGCCTGGATg > 1:59057/1‑149 (MQ=255) gtaCATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgc < 1:266808‑M2/149‑107 (MQ=255) ccACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACaa < 1:52189/148‑1 (MQ=255) cACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTAGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGt > 6:144915/1‑149 (MQ=255) aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc > 6:226000‑M2/1‑34 (MQ=255) aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc < 5:226000‑M2/121‑88 (MQ=255) aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCAGACCCGGCCAGCGTCAAGCTTCGCGACCCCCGCCACTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAACTc > 3:322698/1‑149 (MQ=255) cGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcg < 1:70665‑M2/149‑117 (MQ=255) cGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatg > 5:364264‑M1/1‑3 (MQ=255) cGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCg < 2:289566/149‑1 (MQ=255) ggACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCGGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCgg > 4:192538/1‑149 (MQ=255) gccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatggt < 2:111322‑M1/149‑149 (MQ=255) | GCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG > NC_002947/4117720‑4118002 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |