New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 411785543 (0.760)5 (0.090) 5/244 NT 11.3% coding (545/2256 nt) PP_3622 isoquinoline 1‑oxidoreductase subunit beta
?NC_002947 = 4117881 38 (0.710)coding (571/2256 nt) PP_3622 isoquinoline 1‑oxidoreductase subunit beta

GCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG  >  NC_002947/4117720‑4118002
                                                                                                                                         |                                                                                                                                                     
gcATGAGCTACCCCACCATGCGCCGTCTGGGCGCCCTCGCCCGCGGCATGCAGCTGCAGGCGGGCGCCGAACACCTCGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCAGTAccc                                                                                                                                          >  4:232470/1‑149 (MQ=255)
  aTGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTa                                                                                                                                        >  1:289566/1‑149 (MQ=255)
          ccccACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGc                                                                                                                               >  8:251571/1‑149 (MQ=255)
           cccACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaac                                                                                                                               >  2:266808‑M1/1‑125 (MQ=255)
             caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACg                                                                                                                                      >  3:353300/1‑140 (MQ=255)
             caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACg                                                                                                                                      <  4:353300/140‑1 (MQ=255)
             caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTgg                                                                                                                            >  4:246709/1‑149 (MQ=255)
              aCCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGc                                                                                                                           <  2:111322‑M2/149‑2 (MQ=255)
                cATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccg                                                                                                                         >  5:364264‑M2/1‑146 (MQ=255)
                    cgcCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcg                                                                                                                      <  1:70665‑M1/149‑34 (MQ=255)
                     gcCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTcgc                                                                                                                   <  7:251571/149‑1 (MQ=255)
                        gTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGcc                                                                                                                <  6:98828/149‑1 (MQ=255)
                         tCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTAcc                                                                                                                                           >  4:84788/1‑123 (MQ=255)
                         tCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTAcc                                                                                                                                           <  3:84788/123‑1 (MQ=255)
                            gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACCTACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATgg                                                                                                            >  4:300576/1‑149 (MQ=255)
                            gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATg                                                                                                             >  4:295636/1‑148 (MQ=255)
                             ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGa                                                                                                           >  6:33075/1‑149 (MQ=255)
                             ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGa                                                                                                           >  3:3007/1‑149 (MQ=255)
                              gcgcgcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtac                                                                                                            <  1:266808‑M1/149‑44 (MQ=255)
                              gcgcgcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGAc                                                                                                          >  4:16204/1‑149 (MQ=255)
                                  gcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGc                                                                                                      <  5:33075/149‑1 (MQ=255)
                                    tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCg                                                                                                    >  4:223512/1‑149 (MQ=255)
                                    tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCAAGGACCTGCCg                                                                                                    >  7:245514/1‑149 (MQ=255)
                                      gCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGt                                                                                                  >  7:219020/1‑149 (MQ=255)
                                          ggggCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGccc                                                                                              <  6:348588/149‑1 (MQ=255)
                                                 gctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgt                                                                                                                     >  6:226000‑M1/1‑87 (MQ=255)
                                                 gctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgt                                                                                                                     <  5:226000‑M1/121‑35 (MQ=255)
                                                  ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGc                                                                                      <  3:300576/149‑1 (MQ=255)
                                                  ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGc                                                                                      <  3:295636/149‑1 (MQ=255)
                                                             gggcgCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGc                                                                           >  5:341713/1‑149 (MQ=255)
                                                                cgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgc                                                                        <  6:91707/149‑1 (MQ=255)
                                                                  ccGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACGCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGCCCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcg                                                                       >  1:250719/1‑149 (MQ=255)
                                                                   cGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcgc                                                                      >  1:250474/1‑149 (MQ=255)
                                                                             ggTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGCCCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca                                                           <  2:250719/149‑1 (MQ=255)
                                                                             ggTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca                                                           <  3:223512/149‑1 (MQ=255)
                                                                             ggTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagc                                                             <  4:3007/147‑1 (MQ=255)
                                                                              gtgtACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCa                                                                                                               >  1:284201/1‑96 (MQ=255)
                                                                              gtgtACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCa                                                                                                               <  2:284201/96‑1 (MQ=255)
                                                                                      gTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg                                                  <  8:219020/149‑1 (MQ=255)
                                                                                      gTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg                                                  <  3:16204/149‑1 (MQ=255)
                                                                                           tGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt                                              <  8:110078/148‑1 (MQ=255)
                                                                                           tGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt                                              >  7:110078/1‑148 (MQ=255)
                                                                                            gAGCTTTCTACCACACCGGGTAACGTAGTACATACAACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg                                             >  2:52189/1‑148 (MQ=255)
                                                                                             atcTTTCTACCACAACGGGTAACGTACTAAAAACCACGACCGGAAGTTTCGTACCCTACGGGGTTCTGGGCGGTTGGCTGCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg                                             <  1:111322/146‑1 (MQ=255)
                                                                                                               gggTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACgccgcc                           >  3:118675/1‑149 (MQ=255)
                                                                                                                    aCGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGAt                      <  3:246709/149‑1 (MQ=255)
                                                                                                                      gtagtaCATACCACGACCGGACGTTCCGTACCCTACGGTTGACATGGCCGGTCGCGCCATGGCCATCCCGTTGCCCGACCCGGCCAGCGTCAAGCTGCCCGACCCCAGCCAGTTTCGCTGGATTGGAAACCCCGTACGCCGCCTGGATg                     >  1:59057/1‑149 (MQ=255)
                                                                                                                         gtaCATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgc                  <  1:266808‑M2/149‑107 (MQ=255)
                                                                                                                                ccACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACaa           <  1:52189/148‑1 (MQ=255)
                                                                                                                                 cACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTAGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGt         >  6:144915/1‑149 (MQ=255)
                                                                                                                                  aCGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc                                     >  6:226000‑M2/1‑34 (MQ=255)
                                                                                                                                  aCGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc                                     <  5:226000‑M2/121‑88 (MQ=255)
                                                                                                                                  aCGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCAGACCCGGCCAGCGTCAAGCTTCGCGACCCCCGCCACTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAACTc        >  3:322698/1‑149 (MQ=255)
                                                                                                                                   cGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcg        <  1:70665‑M2/149‑117 (MQ=255)
                                                                                                                                       cGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatg     >  5:364264‑M1/1‑3 (MQ=255)
                                                                                                                                       cGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCg   <  2:289566/149‑1 (MQ=255)
                                                                                                                                        ggACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCGGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCgg  >  4:192538/1‑149 (MQ=255)
                                                                                                                                         gccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatggt   <  2:111322‑M1/149‑149 (MQ=255)
                                                                                                                                         |                                                                                                                                                     
GCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG  >  NC_002947/4117720‑4118002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.