New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4117855	43 (0.760)	5 (0.090)	5/244	NT	11.3%	coding (545/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	= 4117881	38 (0.710)					coding (571/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta

CACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTACTGCATCG  >  NC_002947/4117733‑4118022                                                                                                                                                        |                                                                                                                                               caccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTgg                                                                                                                                                >  4:246709/1‑149 (MQ=255)  aCCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGc                                                                                                                                               <  2:111322‑M2/149‑2 (MQ=255)    cATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccg                                                                                                                                             >  5:364264‑M2/1‑146 (MQ=255)         gcCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑Tcgc                                                                                                                                       <  7:251571/149‑1 (MQ=255)            gTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGcc                                                                                                                                    <  6:98828/149‑1 (MQ=255)                gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACCTACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATgg                                                                                                                                >  4:300576/1‑149 (MQ=255)                gggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATg                                                                                                                                 >  4:295636/1‑148 (MQ=255)                 ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGa                                                                                                                               >  3:3007/1‑149 (MQ=255)                 ggCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGa                                                                                                                               >  6:33075/1‑149 (MQ=255)                  gcgcgcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGAc                                                                                                                              >  4:16204/1‑149 (MQ=255)                      gcTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGc                                                                                                                          <  5:33075/149‑1 (MQ=255)                        tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCg                                                                                                                        >  4:223512/1‑149 (MQ=255)                        tCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCAAGGACCTGCCg                                                                                                                        >  7:245514/1‑149 (MQ=255)                          gCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGt                                                                                                                      >  7:219020/1‑149 (MQ=255)                              ggggCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGccc                                                                                                                  <  6:348588/149‑1 (MQ=255)                                      ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGc                                                                                                          <  3:300576/149‑1 (MQ=255)                                      ctgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGc                                                                                                          <  3:295636/149‑1 (MQ=255)                                                 gggcgCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGc                                                                                               >  5:341713/1‑149 (MQ=255)                                                    cgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgc                                                                                            <  6:91707/149‑1 (MQ=255)                                                      ccGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACGC‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGCCCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcg                                                                                           >  1:250719/1‑149 (MQ=255)                                                       cGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑CGGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgcgc                                                                                          >  1:250474/1‑149 (MQ=255)                                                                 ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGCCCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca                                                                               <  2:250719/149‑1 (MQ=255)                                                                 ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagcca                                                                               <  3:223512/149‑1 (MQ=255)                                                                 ggTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagc                                                                                 <  4:3007/147‑1 (MQ=255)                                                                  gtgtACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCa                                                                                                                                   <  2:284201/96‑1 (MQ=255)                                                                  gtgtACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCa                                                                                                                                   >  1:284201/1‑96 (MQ=255)                                                                          gTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg                                                                      <  8:219020/149‑1 (MQ=255)                                                                          gTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg                                                                      <  3:16204/149‑1 (MQ=255)                                                                               tGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt                                                                  <  8:110078/148‑1 (MQ=255)                                                                               tGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGAtt                                                                  >  7:110078/1‑148 (MQ=255)                                                                                gAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACAACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg                                                                 >  2:52189/1‑148 (MQ=255)                                                                                 atcTTTCTACCACAA‑C‑GGGTAACGTACTAAAAACCACGACCGGAAGTTTCGTACCCTACGG‑GGTTCTGGGCGGTTGGCTGCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTg                                                                 <  1:111322/146‑1 (MQ=255)                                                                                                   gggTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACgccgcc                                               >  3:118675/1‑149 (MQ=255)                                                                                                        aCGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGAt                                          <  3:246709/149‑1 (MQ=255)                                                                                                          gtagtaCATACCACGACCGGACGTTCCGTACCCTACGGTTGACATGGCCGG‑TCGCGCCATGGCCATCCCGTTGCCCGACCCGGCCAGCGTCAAGCTGCCCGACCCCAGCCAGTTTCGCTGGATTGGAAACCCCGTACGCCGCCTGGATg                                         >  1:59057/1‑149 (MQ=255)                                                                                                             gtaCATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgc                                      <  1:266808‑M2/149‑107 (MQ=255)                                                                                                                    ccACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACaa                               <  1:52189/148‑1 (MQ=255)                                                                                                                     cACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTAGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGt                             >  6:144915/1‑149 (MQ=255)                                                                                                                      aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc                                                         <  5:226000‑M2/121‑88 (MQ=255)                                                                                                                      aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagc                                                         >  6:226000‑M2/1‑34 (MQ=255)                                                                                                                      aCGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCAGACCCGGCCAGCGTCAAGCTTCGCGACCCCCGCCACTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAACTc                            >  3:322698/1‑149 (MQ=255)                                                                                                                       cGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcg                            <  1:70665‑M2/149‑117 (MQ=255)                                                                                                                           cGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCg                       <  2:289566/149‑1 (MQ=255)                                                                                                                            ggACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCGGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCgg                      >  4:192538/1‑149 (MQ=255)                                                                                                                                gTTCCGTACCCTACGG‑TGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatggtggg                   >  2:266808‑M2/1‑24 (MQ=255)                                                                                                                                 ttCCGTACGCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCAGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAgg                 <  6:341713/149‑1 (MQ=255)                                                                                                                                         ccTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTAc         <  3:122609/149‑1 (MQ=255)                                                                                                                                          cTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTACt        <  2:59057/149‑1 (MQ=255)                                                                                                                                                 tGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTACTGCATCg  >  3:106975/1‑149 (MQ=255)                                                                                                                                                 tGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTAGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTACTGCATCg  <  5:144915/149‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                               CACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACAC‑C‑GGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGG‑TGAGCTGGCCGG‑TCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGGCAAGGCCCAGTACTGCATCG  >  NC_002947/4117733‑4118022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.