New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5926821 =	38 (0.670)	3 (0.060)	3/242	NT	7.8%	coding (1074/1623 nt)	PP_5195	iron ABC transporter permease
	?	NC_002947	5926859 =	35 (0.660)					coding (1036/1623 nt)	PP_5195	iron ABC transporter permease

CTGGACAACGGGATGACCAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCGGGAT  >  NC_002947/5926714‑5927006                                                                                                                                                  |                                                                                                                                                     ccggcatgacctggatgagcgttatatcggcctggtgctgcacaccctgtacctgggcagcatggcggcgctggtcacggtatgcgtggcgctgctgctggcctttgCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCaaa                                                                                                                                                   >  4:156454‑M1/108‑149 (MQ=255)      cAACGAGATGACCAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGc                                                                                                                                                >  4:56434/1‑147 (MQ=255)       aaCGGGATGACCAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCcag                                                                                                                                             >  7:191237/1‑149 (MQ=255)              tGACCAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCagcagcagc                                                                                                                                      <  7:8809/149‑1 (MQ=255)                 ccAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAgcgc                                                                                                                                    >  5:28590/1‑148 (MQ=255)                 ccAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGcc                                                                                                                                   >  5:33801/1‑149 (MQ=255)                  cAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCa                                                                                                                                  >  2:287428/1‑149 (MQ=255)                  cAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGACCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCa                                                                                                                                  >  6:24354/1‑149 (MQ=255)                         ttGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCTAGCAGCAGCGCCACGCATAc                                                                                                                           <  3:56434/149‑1 (MQ=255)                              gAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGa                                                                                                                      <  8:191237/149‑1 (MQ=255)                                             cAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCAtgc                                                                                                       >  7:165118/1‑149 (MQ=255)                                              aGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCagcagcagc                                                                                                                                      >  6:160093/1‑117 (MQ=255)                                              aGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCagcagcagc                                                                                                                                      <  5:160093/117‑1 (MQ=255)                                                     tCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAgg                                                                                              >  3:316020/1‑149 (MQ=255)                                                           ccGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAgg                                                                                        <  6:28590/149‑1 (MQ=255)                                                           ccGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAgg                                                                                        <  6:33801/149‑1 (MQ=255)                                                               cAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGgtgt                                                                                    >  6:95211/1‑149 (MQ=255)                                                               cAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGgtgt                                                                                    >  4:323400/1‑149 (MQ=255)                                                                aaCACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑ACAGGTACAGGGtgtg                                                                                   >  4:237821/1‑149 (MQ=255)                                                                 acacCGAACCGGGCAGGGCATACCGCAGATTGGCCAGGGCAACCCCGGCGCGGATACCGCCCGGCGGGGCCTGGCGCCGGGCAAAGGCCCGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTgc                                                                                  <  6:113495/149‑1 (MQ=255)                                                                              cagggcaTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGa                                                                     <  4:316020/149‑1 (MQ=255)                                                                              cagggcaTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGa                                                                     <  5:284047/149‑1 (MQ=255)                                                                                gggcaTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGata                                                                   >  2:234948/1‑149 (MQ=255)                                                                                 ggcaTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGata                                                                   >  5:249207/1‑148 (MQ=255)                                                                                  gcaTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGatat                                                                  >  7:324854/1‑148 (MQ=255)                                                                                   caTACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGGCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATaa                                                                <  5:24354/149‑1 (MQ=255)                                                                                     tACCCCAGATTGGCCATGCCAACCCCGGCGCGGATACCGCCCGTCTGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACg                                                              <  7:270253/149‑1 (MQ=255)                                                                                       ccccAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCt                                                            >  7:153976/1‑149 (MQ=255)                                                                                           aGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATc                                                        >  8:163993/1‑149 (MQ=255)                                                                                                 gccaggccaACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGt                                                   >  8:84075/1‑148 (MQ=255)                                                                                                       ccaACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATgccg                                            <  6:249207/149‑1 (MQ=255)                                                                                                        tttgcccggcgccaggcaccgacgggcggtatccgcgccgggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATgccgg                                           >  4:156454‑M2/43‑149 (MQ=255)                                                                                                         aaCCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCAt                                                                                                         <  4:236640/87‑1 (MQ=255)                                                                                                         aaCCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCAt                                                                                                         >  3:236640/1‑87 (MQ=255)                                                                                                            CCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCcgc                                       <  7:92390‑M1/149‑1 (MQ=255)                                                                                                            CCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCcgc                                       >  8:92390‑M1/1‑149 (MQ=255)                                                                                                             ccggcgccaggcaccgacgggcggtatccgcgccgggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATaa                                                                >  6:232390‑M2/38‑123 (MQ=255)                                                                                                             ccggcgccaggcaccgacgggcggtatccgcgccgggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATaa                                                                <  5:232390‑M2/86‑1 (MQ=255)                                                                                                               GGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGCACCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGt                                     >  1:287428‑M1/1‑149 (MQ=255)                                                                                                                  GCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGcc                                 >  7:84075‑M1/1‑149 (MQ=255)                                                                                                                      aTACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGaa                             >  6:120181/1‑149 (MQ=255)                                                                                                                          cGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCAAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCAc                         >  3:82325/1‑149 (MQ=255)                                                                                                                              cGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCACCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGc                       >  5:209546/1‑147 (MQ=255)                                                                                                                                     gCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTg              <  8:153976/149‑1 (MQ=255)                                                                                                                                       cTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTg              >  6:61977/1‑147 (MQ=255)                                                                                                                                             ccgggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCg      <  3:323400‑M2/144‑1 (MQ=255)                                                                                                                                              cgggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCACCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCgg     <  6:209546‑M2/145‑1 (MQ=255)                                                                                                                                               gggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCggg    <  1:234948‑M2/146‑1 (MQ=255)                                                                                                                                                ggCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCGGGa   <  7:163993‑M2/147‑1 (MQ=255)                                                                                                                                                 gCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATgccggcc                                         <  4:348371‑M2/109‑1 (MQ=255)                                                                                                                                                 gCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATgccggcc                                         >  3:348371‑M2/2‑110 (MQ=255)                                                                                                                                                 gCAAAGGCCAGCAGCAGCGACACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGTCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCGGgac  <  8:324854‑M2/148‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CTGGACAACGGGATGACCAGGTGGTTGTCGAGGTAACTGAAGGCCAGCATGATCGATACCGCCAACACCGAACCGGGCAGGGCATACCCCAGATTGGCCAGGCCAACCCCGGCGCGGATACCGCCCGTCGGTGCCTGGCGCCGGGCAAAGGCCAGCAGCAGCGCCACGCATACCGTGACCAGCGCCGCCATGCTGC‑CCAGGTACAGGGTGTGCAGCACCAGGCCGATATAACGCTCATCCAGGTCATGCCGGCCGCGTTGCCAGAACCACGCCAGCAACTGCAGCAGCGGGAT  >  NC_002947/5926714‑5927006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.