| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 284096 = | 41 (0.740) | 7 (0.130) | 6/242 | NT | 14.6% | coding (1547/2004 nt) | betT‑II | choline/carnitine/betaine transporter |
| ? | NC_002947 | 284148 = | 43 (0.820) | coding (1599/2004 nt) | betT‑II | choline/carnitine/betaine transporter | |||||
CGAACACTTCACGCACATCGGCAATCGCCGGGCGCACCACATCATCCATGAAGCGGTACACCTCATCACGCGACGGGAAGTGCACTGCCTGGCTCAGGCGCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/284245‑284096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCGAGCAGAAAGGCCTGGTACTGATTACCCAGGACGACCCTAGCCATG > NC_002947/284148‑284290 CGAACACTTCACGCACATCGGCAATCGCCGGGCGCACCACATCATCCATGAAGCGGTACACCTCATCACGCGACGGGAAGTGCACTGCCTGGCTCAGGCGCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGC < 2:324317/149‑1CGAACACTTCACGCACATCGGCAATCGCCGGGCGCACCACATCATCCATGAAGCGGTACACCTCATCACGCGACGGGAAGTGCACTGCCTGGCTCAGGCGCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGC < 3:257019/149‑1 CGCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTC > 5:229759/1‑149 GCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTTGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGT > 7:248763/1‑144 GCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTTGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGT < 8:248763/144‑1 GCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGAT < 7:18442/133‑1 GCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGAT > 8:18442/1‑133 CTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCG < 7:88517/148‑1 CTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCG > 8:88517/1‑148 GCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCGAGCAGAAAGGCCTGGTACTGATTACCCAGGACGACCCTAGCCAT > 1:234304/1‑149 CCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCGAGCAGAAAGGCCTGGTACTGATTACCCAGGACGACCCTAGCCATG < 2:234304/149‑1 CGAACACTTCACGCACATCGGCAATCGCCGGGCGCACCACATCATCCATGAAGCGGTACACCTCATCACGCGACGGGAAGTGCACTGCCTGGCTCAGGCGCTGGCGCCAGCCGCCACGACCACGACGTGACTGGGCGAACGGGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/284245‑284096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcgCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTTCGAGCAGAAAGGCCTGGTACTGATTACCCAGGACGACCCTAGCCATG > NC_002947/284148‑284290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |