New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	284096 =	41 (0.740)	7 (0.130)	6/242	NT	14.6%	coding (1547/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	284148 =	43 (0.820)					coding (1599/2004 nt)	betT‑II	choline/carnitine/betaine transporter

GCGCTGTTGTTCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTT  >  NC_002947/283948‑284243                                                                                                                                                     |                                                                                                                                                    gcgcTGTTGTTCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGAGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTc                                                                                                                                                     <  4:43339/149‑1 (MQ=255)     tgttgtTCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTg                                                                                                                                                 <  3:184182/149‑1 (MQ=255)      catggctagggtcgtcctgggtaatcagtaccaggcctttctgctcgaacacttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTgg                                                                                                                                                <  2:234304‑M1/6‑1 (MQ=255)       atgttCTCTGGCATCATCGATTCTCTGAAGTAGCCAGTTGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGTTGGCTGCACAAGGCTTTCTACCTGGAGTCGCAGCGGCAGATCTCGCAGATGCACTCGCTgg                                                                                                                                                <  4:234068/147‑1 (MQ=255)       atggctagggtcgtcctgggtaatcagtaccaggcctttctgctcgaacacttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGc                                                                                                                                               >  1:234304‑M1/143‑149 (MQ=255)         gttCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGcc                                                                                                                                              <  1:7349/148‑1 (MQ=255)          ttCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGcccc                                                                                                                                            >  6:271240/1‑149 (MQ=255)              cTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTc                                                                                                                                        <  1:351202/149‑1 (MQ=255)                  cagcaTCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGcc                                                                                                                                     >  1:282945/1‑148 (MQ=255)                  cagcaTCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGcc                                                                                                                                     <  2:282945/148‑1 (MQ=255)                    gcaTCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGc                                                                                                                                                   <  5:164737/132‑1 (MQ=255)                    gcaTCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGc                                                                                                                                                   >  6:164737/1‑132 (MQ=255)                      aTCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCCATCTACCTCGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGt                                                                                                                                 >  5:70910/1‑148 (MQ=255)                              gCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGACTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACgtcgtg                                                                                                                        <  8:189322/149‑1 (MQ=255)                              gCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCAAGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGTACGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCAcgtc                                                                                                                           >  7:325655/1‑146 (MQ=255)                                     tCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGtcgtggtcgtgg                                                                                                                 >  1:99900/1‑149 (MQ=255)                                       ggCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTc                                                                                                                                        <  4:65604/124‑1 (MQ=255)                                       ggCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTc                                                                                                                                        >  3:65604/1‑124 (MQ=255)                                              gtgCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGgc                                                                                                         <  3:133861/148‑1 (MQ=255)                                                gCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGACGTGGTCGTGGCGGCTGgcgc                                                                                                       >  5:182408/1‑148 (MQ=255)                                                   cgaacacttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAg                                                                                                    <  7:88517‑M1/50‑1 (MQ=255)                                                   cgaacacttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAg                                                                                                    >  8:88517‑M1/99‑148 (MQ=255)                                                    gaacacttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgcg                                                                                                  >  5:229759‑M1/98‑149 (MQ=255)                                                    aCGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTCGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgct                                                                                                  >  6:120790/1‑148 (MQ=255)                                                        acttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcaacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgc                                                                                                   <  8:248763‑M1/51‑1 (MQ=255)                                                        acttcacgcacatcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcaacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgc                                                                                                   >  7:248763‑M1/94‑144 (MQ=255)                                                         gCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGAGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCt                                                                                               >  5:331491/1‑147 (MQ=255)                                                               gTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCCCGGCGTGGTCGTGGCGGCAGGCCCCACCGCCTGAGCCAgg                                                                                       >  7:262872/1‑149 (MQ=255)                                                                ttCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGgc                                                                                                         <  6:142378/130‑1 (MQ=255)                                                                ttCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAgg                                                                                       >  4:111425/1‑148 (MQ=255)                                                                  ctcGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCa                                                                                     <  6:331491/148‑1 (MQ=255)                                                                   tcGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAg                                                                                            <  1:1994/140‑1 (MQ=255)                                                                   tcGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAg                                                                                            >  2:1994/1‑140 (MQ=255)                                                                   atcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgc                                                                                                   <  7:18442‑M1/51‑1 (MQ=255)                                                                   atcggcaatcgccgggcgcaccacatcatccatgaagcggtacacctcatcacgcgacgggaagtgcactgcctggctcaggCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAgc                                                                                                   >  8:18442‑M1/83‑133 (MQ=255)                                                                               ctgTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTccc                                                                          <  2:99900/146‑1 (MQ=255)                                                                                     atgatgTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGtga                                                                 <  5:271240/149‑1 (MQ=255)                                                                                     atgatgTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGtga                                                                 >  1:217761/1‑149 (MQ=255)                                                                                                     acaAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTAc                                                       >  5:46790/1‑143 (MQ=255)                                                                                                     acaAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTAc                                                       <  6:46790/143‑1 (MQ=255)                                                                                                         ggCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATgg                                             <  6:182408/149‑1 (MQ=255)                                                                                                                  ccTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATgtgg                                    >  3:50570/1‑149 (MQ=255)                                                                                                                   cTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGgatgat                                        <  2:197472/144‑1 (MQ=255)                                                                                                                   cTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATgtggt                                   >  5:317424/1‑149 (MQ=255)                                                                                                                   cTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGACACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGgatgat                                        >  1:197472/1‑144 (MQ=255)                                                                                                                           gCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCgg                           >  1:352680/1‑149 (MQ=255)                                                                                                                            cAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGTTGAGGTGTACCGCGGGATGGATGATGTGGTGCGCCCGGc                          >  4:28203/1‑149 (MQ=255)                                                                                                                            cAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGc                          >  8:182265/1‑149 (MQ=255)                                                                                                                                  cAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGc                    <  2:352680/149‑1 (MQ=255)                                                                                                                                   aGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGcc                   <  2:217761/149‑1 (MQ=255)                                                                                                                                   aGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGcc                   <  3:111425/149‑1 (MQ=255)                                                                                                                                        gcgcAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGAtgtg                                     <  6:13120/126‑1 (MQ=255)                                                                                                                                        gcgcAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGAtgtg                                     >  5:13120/1‑126 (MQ=255)                                                                                                                                          gcAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGc            <  6:317424/149‑1 (MQ=255)                                                                                                                                                gCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAg      >  5:277089/1‑149 (MQ=255)                                                                                                                                                    tCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGtt  >  3:188518/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCGCTGTTGTTCGCTGGCAGCATCGATTCGCTGAAGTCGGCAGTGGTGCTGACGTCGCTGCCGTTCTCGCTCATTCTGCTGTGCATGATGTGGGGGCTGCACAAGGCGTTCTACCTGGAGTCGCAGCGGCAGATCGCGCAGATGCACTCGCTGGCCCCGTTCGCCCAGTCACGTCGTGGTCGTGGCGGCTGGCGCCAGCGCCTGAGCCAGGCAGTGCACTTCCCGTCGCGTGATGAGGTGTACCGCTTCATGGATGATGTGGTGCGCCCGGCGATTGCCGATGTGCGTGAAGTGTT  >  NC_002947/283948‑284243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.