New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 341039	53 (0.960)	5 (0.090)	4/244	NT	8.8%	coding (68/177 nt)	PP_5438	hypothetical protein
	?	NC_002947	= 341063	53 (1.000)					coding (44/177 nt)	PP_5438	hypothetical protein

CTGTTGGCGGCCTTCCTGGCGTGCGCCAAGCTAGCATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/340886‑341039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGGGCGACACCTTCGCGGACATCTGCGCGACGTTACGCTGTAGCGATGCGACAAACTGCCCCACCAGCGCCCCCAGTCCCCGGCGACCCTGTTGGCCGTCATAATGCCGCTAT  <  NC_002947/341063‑340921                                                                                                                                                                                                                                                                                                           CTGTTGGCGGCCTTCCTGGCGTGCGCCAAGCTAGCATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAG                                                                                                                                                      >  7:320365/1‑149    TTGGCGGCCTTCCTGGCGTGCGCCAAGCTAGCATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCAC                                                                                                                                                   >  7:126638/1‑149            CTTCCTGGCGTGCGCCAAGCTAGCATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCATCGCGC                                                                                                                                           >  4:217028/1‑149                                       GCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGG                                                                                                                <  5:243121/149‑1                                       GCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTG                                                                                                                 <  3:217028/148‑1                                        CGGCATTATGACGGCCAACAGGGTCGCCGGGGACGGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGG                                                                                                                >  3:30140/1‑148                                        CGGCATTATGACGGCCAACAGGGTCGCCGGGGACGGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGG                                                                                                                <  4:30140/148‑1                                                                                                                                                  ctgtCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGGGCGACACCTTCGCGGACATCTGCGCGACGTTACGCTGTAGCGATGCGACAAACTGCCCCACCAGCGCCCCCAGTCCCCGGCGACCCTGTTGGCCGTCATAATGCCGC     <  5:105069/145‑1                                                                                                                                                     GCACCATCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGGGCGACACCTTCGCGGACATCTGCGCGACGTTACGCTGTAGCGATGCGACAAACTGCCCCACCAGCGCCCCCAGTCCCCGGCGACCCTGTTGGCCGTCATAATGCCGCTAT  <  2:223475/149‑1                                                                                                                                                                                                                                                                                                           CTGTTGGCGGCCTTCCTGGCGTGCGCCAAGCTAGCATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/340886‑341039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaccaTCGCGCCTTTTTTCATCAAGGCTCTGGTGCTGGGCGACACCTTCGCGGACATCTGCGCGACGTTACGCTGTAGCGATGCGACAAACTGCCCCACCAGCGCCCCCAGTCCCCGGCGACCCTGTTGGCCGTCATAATGCCGCTAT  <  NC_002947/341063‑340921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.