New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 341039	53 (0.960)	5 (0.090)	4/244	NT	8.8%	coding (68/177 nt)	PP_5438	hypothetical protein
	?	NC_002947	= 341063	53 (1.000)					coding (44/177 nt)	PP_5438	hypothetical protein

ATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACTTTTTGGCATT  >  NC_002947/340921‑341207                                                                                                                                                |                                                                                                                                                 aTAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgc                                                                                                                                            <  2:223475‑M2/149‑7 (MQ=255)    gCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgacag                                                                                                                                         <  5:105069‑M2/149‑10 (MQ=255)        ctttATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCttt                                                                                                                                     <  7:235299/147‑1 (MQ=255)         aTTATGACGGCCAACAGGGGCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTGGTCGCATCGCTACAGCGTAACGTCGCGCATATGGCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTg                                                                                                                                    <  2:59627/149‑1 (MQ=255)                cGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGGAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATGCAAAAAAGGCGCGATGGTGCCAGCTTTGGCCgg                                                                                                                               <  1:223475/148‑1 (MQ=255)                   ccAACAGGGTCGCCGGGGACTGGGGGCACTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCAt                                                                                                                          <  8:147197/149‑1 (MQ=255)                     aaCAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATg                                                                                                                         >  8:176978/1‑148 (MQ=255)                      aCAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCgg                                                                                                                               <  6:131635/141‑1 (MQ=255)                      aCAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCgg                                                                                                                               >  5:131635/1‑141 (MQ=255)                       cAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATgg                                                                                                                        >  1:13419/1‑147 (MQ=255)                               ccGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGtttt                                                                                                              <  2:13419/149‑1 (MQ=255)                                        gggggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAc                                                                                                           <  5:75062/143‑1 (MQ=255)                                        gggggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAc                                                                                                           >  6:75062/1‑143 (MQ=255)                                         ggggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTg                                                                                                     <  5:43112/148‑1 (MQ=255)                                         ggggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTg                                                                                                     <  7:139855/148‑1 (MQ=255)                                           ggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAg                                                                                                  >  8:256070/1‑149 (MQ=255)                                           ggCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAg                                                                                                  <  7:176978/149‑1 (MQ=255)                                            gcgcTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAgg                                                                                                 >  4:112745/1‑149 (MQ=255)                                                       gCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTg                                                                                                                                    >  4:61760/1‑103 (MQ=255)                                                       gCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTg                                                                                                                                    <  3:61760/103‑1 (MQ=255)                                                        cAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGAc                                                                                     <  3:112745/149‑1 (MQ=255)                                                          gTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCt                                                                                   >  6:273569/1‑149 (MQ=255)                                                              gTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGa                                                                                                            <  2:188517/120‑1 (MQ=255)                                                              gTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGa                                                                                                            >  1:188517/1‑120 (MQ=255)                                                                 gCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAc                                                                                                           >  6:251104/1‑118 (MQ=255)                                                                 gCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAc                                                                                                           <  5:251104/118‑1 (MQ=255)                                                                   aTCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGt                                                                          >  3:5206/1‑149 (MQ=255)                                                                       cTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCg                                                                                       >  4:141248/1‑132 (MQ=255)                                                                       cTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCg                                                                                       <  3:141248/132‑1 (MQ=255)                                                                          cAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTaa                                                                     <  7:256070/147‑1 (MQ=255)                                                                            gCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACggg                                                                 <  8:126638/149‑1 (MQ=255)                                                                             cGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACGCATTGGAGGGGTAAACCCGACGTTTTGCCAGTGCTAACGGGt                                                                >  6:287569/1‑149 (MQ=255)                                                                                  cGTCGCGCAGATGTCCTCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCAcc                                                           <  4:5206/149‑1 (MQ=255)                                                                                         cAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAAt                                                    >  3:239345/1‑149 (MQ=255)                                                                                               tCCGCGAAGGAGTCGCCCAGCACCAGAGCCTAGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAACCCCGACCTTTTGCCAGAGCTAACGGGTTCACCCACTAATGCCATg                                              >  5:247147/1‑149 (MQ=255)                                                                                                 cgcgAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGt                                                                                              <  3:138588/99‑1 (MQ=255)                                                                                                 cgcgAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGt                                                                                              >  4:138588/1‑99 (MQ=255)                                                                                                           tCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGTAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCGCGAATGCCa                                                >  5:332375/1‑135 (MQ=255)                                                                                                           tCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGTAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCGCGAATGCCa                                                <  6:332375/135‑1 (MQ=255)                                                                                                             gCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAg                                 <  5:273569/148‑1 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgctgggcgacaccttcgcggacatctgcgcgacgttacgctgtagcgatgcgacaaactgccccaccagcgccccccgtccccggcgaccctgttggccgtcataatgccg                               <  4:30140‑M2/148‑116 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgctgggcgacaccttcgcggacatctgcgcgacgttacgctgtagcgatgcgacaaactgccccaccagcgccccccgtccccggcgaccctgttggccgtcataatgccg                               >  3:30140‑M2/1‑33 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgctgggcgacaccttcgcggacatctgcgcgacgttacgctgtagcgatgcgacaaactgccccaccagcgcccccagtccccggcgaccctgttggccgtcataatgccgc                              <  5:243121‑M2/149‑117 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGtt                              >  6:130717/1‑149 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGtt                              >  2:67814/1‑149 (MQ=255)                                                                                                               ccAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTCCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGtt                              >  6:81621/1‑149 (MQ=255)                                                                                                                cAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGAtggtgctgggcgacaccttcgcggacatctgcgcgacgttacgctgtagcgatgcgacaaactgccccaccagcgcccccagtccccggcgaccctgttggccgtcataatgccgc                              <  3:217028‑M2/148‑117 (MQ=255)                                                                                                                cAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGt                                                                >  5:38309/1‑114 (MQ=255)                                                                                                                cAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGt                                                                <  6:38309/114‑1 (MQ=255)                                                                                                                      cAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCa                       >  8:33395/1‑149 (MQ=255)                                                                                                                               gatg‑aAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACaa                                  >  7:190357/1‑129 (MQ=255)                                                                                                                               gatg‑aAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACaa                                  <  8:190357/129‑1 (MQ=255)                                                                                                                                atg‑aAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAcc                                                                                                          <  7:296082/56‑1 (MQ=255)                                                                                                                                atg‑aAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGAcc                                                                                                          >  8:296082/1‑56 (MQ=255)                                                                                                                                atg‑aAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCa              <  7:33395/148‑1 (MQ=255)                                                                                                                                    aaaaaaGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATATTGATATCACAAGGTTGTACCCATGGGTTGCACttt          >  2:258152/1‑149 (MQ=255)                                                                                                                                     aaaaaGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACtttt         >  5:313024/1‑149 (MQ=255)                                                                                                                                        aaGGCGCGATGGTGCCAGCTTTGGCCTGCTGATGGTAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACTTTTTgg      <  4:239345/149‑1 (MQ=255)                                                                                                                                        aaGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACTTTTTgg      <  5:130717/149‑1 (MQ=255)                                                                                                                                           gcgcGAtggtgctgggcgacaccttcgcggacatctgcgcgacgttacgctgtagcgatgcgacaaactgccccaccagcgcccccagtccccggcgaccctgttggccgtcataatgccgctatgctagcttggcgcacgccaggaag   >  4:217028‑M2/1‑6 (MQ=255)                                                                                                                                             gcgATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACTTTTTGGCAtt  >  3:312948/1‑148 (MQ=255)                                                                                                                                                aTGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGc                                                                              <  5:218573/69‑1 (MQ=255)                                                                                                                                                aTGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGc                                                                              >  6:218573/1‑69 (MQ=255)                                                                                                                                                |                                                                                                                                                 ATAGCGGCATTATGACGGCCAACAGGGTCGCCGGGGACTGGGGGCGCTGGTGGGGCAGTTTGTCGCATCGCTACAGCGTAACGTCGCGCAGATGTCCGCGAAGGTGTCGCCCAGCACCAGAGCCTTGATG‑AAAAAAGGCGCGATGGTGCCAGCTTTGGCCGGCTCATGGAAGCTGTTTTGACCCATTGGAGGGGTAAACCCGACCTTTTGCCAGTGCTAACGGGTTCACCCACGAATGCCATGTTGATATCACAAGGTTGTACCCATGGGTTGCACTTTTTGGCATT  >  NC_002947/340921‑341207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.