New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	364566 =	59 (1.070)	3 (0.060)	3/234	NT	5.4%	intergenic (‑33/+91)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein
	?	NC_002947	364649 =	51 (1.010)					intergenic (‑116/+8)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein

GCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/364723‑364566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaaGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGTGGTC  >  NC_002947/364649‑364791                                                                                                                                                                                                                                                                                                               GCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATG                                                                                                                                                          >  3:303441/1‑149   TTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCC                                                                                                                                                        >  4:21460/1‑149      AGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGC                                                                                                                                                     <  1:355190/149‑1                                                             CAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA                                                                                                                                                 >  3:106488/1‑98                                                             CAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA                                                                                                                                                 <  4:106488/98‑1                                                                                            GCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGG                                                               >  3:79859/1‑149                                                                                             CTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGC                                                              >  7:245446/1‑149                                                                                                 CACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTG                                                          <  8:245446/149‑1                                                                                                                                                      CCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTCTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGTG     <  5:312090/149‑1                                                                                                                                                         GCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGTGGTC  >  8:158126/1‑149                                                                                                                                                                                                                                                                                                               GCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCCCTTTCGCGGGCAAGCCCGCTCCCACGGGTACAGCGCCACACTCGGGATCACATTGATCCTGTGGGAGCGGGCATGCCCGCGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/364723‑364566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaaGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGTTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGGCGGGCTGATTCCAGCGCGTCCTTGTGGTC  >  NC_002947/364649‑364791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.