New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1439816 | 38 (0.690) | 3 (0.060) | 3/236 | NT | 7.7% | intergenic (‑147/‑512) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
? | NC_002947 | = 1439839 | 37 (0.730) | intergenic (‑170/‑489) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
ACATGGGTTCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1439666‑1439816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttctgcaaCTGTGCCGATTTCGTCATCCCCCTTGCAGAAAACCATCAAGAACCGCCGCCCTGATCGGTCCACTCTATGCCCCACGCAAGCCGCCCAAGTCCTACAAGAGCGCGGCCCAAAAAGCCGCATCTCGTGACATCAGACCTGCCTATCC < NC_002947/1439839‑1439694 ACATGGGTTCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCT < 3:128172/147‑1 GATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTG > 5:195204/1‑119 GATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTG < 6:195204/119‑1 GATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTT < 5:330399/116‑1 GATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTT > 6:330399/1‑116 ATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAACTGTGCCGATTTCGTCATCCCCCTTGCAGAAAACCATC < 5:3688/146‑1 GTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTT < 7:77011/100‑1 GTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTT > 8:77011/1‑100 TAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAACTGTGCCGATTTCGTCATCCCCCTTGCAGAAAA > 2:264271/1‑105 TAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCATGATGGTTTTCTGCAACTGTGCCGATTTCGTCATCCCCCTTGCAGAAAA < 1:264271/105‑1 TTCTGCAACTGTGCCGATTTCGTCATCCCCCTTGCAGAAAACCATCAAGAACCGCCGCCCTGATCGGTCCACTCTATGCCCCACGCAAGCCGCCCAAGTCCTACAAGAGCGCGGCCCAAAAAGCCGCATCTCGTGACATCAGACCTGC < 3:89822/148‑1 AACTGTGCCGATTTCGTCATCCCCCTTGCAGAAAACCATCAAGAACCGCCGCCCTGATCGGTCCACTCTATGCCCCACGCAAGCCGCCCAAGTCCTACAAGAGCGCGGCCCAAAAAGCCGCATCTCGTGACATCAGACCTGCCTATCC > 8:40092/1‑148 ACATGGGTTCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1439666‑1439816 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttctgcaaCTGTGCCGATTTCGTCATCCCCCTTGCAGAAAACCATCAAGAACCGCCGCCCTGATCGGTCCACTCTATGCCCCACGCAAGCCGCCCAAGTCCTACAAGAGCGCGGCCCAAAAAGCCGCATCTCGTGACATCAGACCTGCCTATCC < NC_002947/1439839‑1439694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |