New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1439816	38 (0.690)	3 (0.060)	3/236	NT	7.7%	intergenic (‑147/‑512)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1439839	37 (0.730)					intergenic (‑170/‑489)	yveA/PP_1260	aspartate‑proton symporter/transposase

TTCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACG  >  NC_002947/1439673‑1439963                                                                                                                                                |                                                                                                                                                     ttCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAgggg                                                                                                                                                  >  4:68450/1‑148 (MQ=255)   cGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGAt                                                                                                                                               >  7:40092/1‑149 (MQ=255)                      ggATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGtt                                                                                                                             >  8:40092‑M2/1‑146 (MQ=255)                            gCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaa                                                                                                                       <  3:89822‑M2/148‑9 (MQ=255)                              aGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGa                                                                                                                                                <  6:237377/121‑1 (MQ=255)                                 tCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAg                                                                                                                 >  2:78136/1‑149 (MQ=255)                                 tCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAg                                                                                                                 <  4:95459/149‑1 (MQ=255)                                  cTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGt                                                                                                                <  3:132186/149‑1 (MQ=255)                                     aTGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAActgtgccgatttcgtcatcccccttgcagaaaaccatc                                                                                                                <  5:3688‑M1/146‑39 (MQ=255)                                          aCGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGcc                                                                                                        >  1:289630/1‑149 (MQ=255)                                            gagaTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCg                                                                                                       >  1:225326/1‑148 (MQ=255)                                            gagaTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGc                                                                                                      <  2:289630/149‑1 (MQ=255)                                               aTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCa                                                                                                     >  3:3143/1‑147 (MQ=255)                                                  cGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGc                                                                                                 <  1:78136/148‑1 (MQ=255)                                                   ggCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACg                                                                                                                                           >  4:30670/1‑105 (MQ=255)                                                            ggCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCTCAAAGCGTGGGGATAgg                                                                                      <  4:89822/149‑1 (MQ=255)                                                                   ctctTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAg                                                                              <  2:225326/149‑1 (MQ=255)                                                                    tctTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGc                                                                             >  2:162909/1‑149 (MQ=255)                                                                        gTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATa                                                                         >  7:111871/1‑149 (MQ=255)                                                                         tAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAActgtgccgatttcgtcatcccccttgcagaaaa                                                                                                                     >  2:264271‑M1/1‑72 (MQ=255)                                                                         tAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCATGATGGTTTTCTGCAActgtgccgatttcgtcatcccccttgcagaaaa                                                                                                                     <  1:264271‑M1/105‑34 (MQ=255)                                                                                  ggcggcTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAg                                                                <  6:50943/148‑1 (MQ=255)                                                                                   gcggcTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAggg                                                              >  8:93933/1‑149 (MQ=255)                                                                                          gCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgag                                                        <  8:111871/148‑1 (MQ=255)                                                                                          gCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTga                                                         <  4:3143/147‑1 (MQ=255)                                                                                           cGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgaga                                                       <  3:68450/148‑1 (MQ=255)                                                                                              ggggCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATg                                                   >  7:181739/1‑149 (MQ=255)                                                                                                 gCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAg                                                <  8:181739/149‑1 (MQ=255)                                                                                                 gCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAg                                                >  4:243837/1‑149 (MQ=255)                                                                                                     agagTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGc                                             >  3:137941/1‑148 (MQ=255)                                                                                                      gagTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGGTGCAAAGCCATACCGGATAAGGGTTTGATATATGCAGTGCt                                            >  1:119454/1‑149 (MQ=255)                                                                                                       agTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGGAAGCCGCAAAGCTTGGGCATAGGCT‑CAAAGACATACCGGATAAGTGTTTGAGAGATGCAGTGCTAg                                          >  1:278759/1‑149 (MQ=255)                                                                                                           gACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGc                                       <  3:243837/148‑1 (MQ=255)                                                                                                                     ggcggcGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCtttag                            >  5:113787/1‑147 (MQ=255)                                                                                                                      gcggcgGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTcgc                           >  7:262741/1‑149 (MQ=255)                                                                                                                       cggcggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTgg                                                                                                              >  1:347747/1‑66 (MQ=255)                                                                                                                       cggcggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTgg                                                                                                              <  2:347747/66‑1 (MQ=255)                                                                                                                           ggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGt                       >  7:38191/1‑148 (MQ=255)                                                                                                                               cTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAAc                   <  8:262741/148‑1 (MQ=255)                                                                                                                                  gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtcctacaagagcgcggcccaaaaagccgcatctcgtgacat                   <  5:3688‑M2/146‑109 (MQ=255)                                                                                                                                  gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgagag                                                      >  8:42696/1‑110 (MQ=255)                                                                                                                                  gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgagag                                                      <  7:42696/110‑1 (MQ=255)                                                                                                                                  gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGc               >  2:306011/1‑149 (MQ=255)                                                                                                                                     ggTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTc             <  1:306011/148‑1 (MQ=255)                                                                                                                                      gTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTcc            <  1:162909/148‑1 (MQ=255)                                                                                                                                       ttttCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcatgaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtccta                                                       <  1:264271‑M2/105‑73 (MQ=255)                                                                                                                                       ttttCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtccta                                                       >  2:264271‑M2/1‑33 (MQ=255)                                                                                                                                         ttCTGCAActgtgccgatttcgtcatcccccttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtcctacaagagcgcggcccaaaaagccgcatctcgtgacatcagacctgc          <  3:89822‑M1/148‑141 (MQ=255)                                                                                                                                               aactgtgccgatttcgtcatcccccttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtcctacaagagcgcggcccaaaaagccgcatctcgtgacatcagacctgcctatcc    >  8:40092‑M1/1‑2 (MQ=255)                                                                                                                                               aaGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACg  >  2:161250/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     TTCGCCTTTTTGTTGGTTATTGGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACG  >  NC_002947/1439673‑1439963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.