New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1439816	38 (0.690)	3 (0.060)	3/236	NT	7.7%	intergenic (‑147/‑512)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1439839	37 (0.730)					intergenic (‑170/‑489)	yveA/PP_1260	aspartate‑proton symporter/transposase

GGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGG  >  NC_002947/1439694‑1439985                                                                                                                                                  |                                                                                                                                                    ggATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGtt                                                                                                                                                   >  8:40092‑M2/1‑146 (MQ=255)       gCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaa                                                                                                                                             <  3:89822‑M2/148‑9 (MQ=255)            tCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAg                                                                                                                                       >  2:78136/1‑149 (MQ=255)            tCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAg                                                                                                                                       <  4:95459/149‑1 (MQ=255)             cTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGt                                                                                                                                      <  3:132186/149‑1 (MQ=255)                     aCGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGcc                                                                                                                              >  1:289630/1‑149 (MQ=255)                       gagaTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCg                                                                                                                             >  1:225326/1‑148 (MQ=255)                       gagaTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGc                                                                                                                            <  2:289630/149‑1 (MQ=255)                          aTGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCa                                                                                                                           >  3:3143/1‑147 (MQ=255)                             cGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGc                                                                                                                       <  1:78136/148‑1 (MQ=255)                                       ggCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCTCAAAGCGTGGGGATAgg                                                                                                            <  4:89822/149‑1 (MQ=255)                                              ctctTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAg                                                                                                    <  2:225326/149‑1 (MQ=255)                                               tctTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGc                                                                                                   >  2:162909/1‑149 (MQ=255)                                                   gTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATa                                                                                               >  7:111871/1‑149 (MQ=255)                                                             ggcggcTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAg                                                                                      <  6:50943/148‑1 (MQ=255)                                                              gcggcTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAggg                                                                                    >  8:93933/1‑149 (MQ=255)                                                                     gCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgag                                                                              <  8:111871/148‑1 (MQ=255)                                                                     gCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTga                                                                               <  4:3143/147‑1 (MQ=255)                                                                      cGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgaga                                                                             <  3:68450/148‑1 (MQ=255)                                                                         ggggCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATg                                                                         >  7:181739/1‑149 (MQ=255)                                                                            gCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAg                                                                      <  8:181739/149‑1 (MQ=255)                                                                            gCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAg                                                                      >  4:243837/1‑149 (MQ=255)                                                                                agagTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGc                                                                   >  3:137941/1‑148 (MQ=255)                                                                                 gagTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGGTGCAAAGCCATACCGGATAAGGGTTTGATATATGCAGTGCt                                                                  >  1:119454/1‑149 (MQ=255)                                                                                  agTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGGAAGCCGCAAAGCTTGGGCATAGGCT‑CAAAGACATACCGGATAAGTGTTTGAGAGATGCAGTGCTAg                                                                >  1:278759/1‑149 (MQ=255)                                                                                      gACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGc                                                             <  3:243837/148‑1 (MQ=255)                                                                                                ggcggcGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCtttag                                                  >  5:113787/1‑147 (MQ=255)                                                                                                 gcggcgGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTcgc                                                 >  7:262741/1‑149 (MQ=255)                                                                                                  cggcggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTgg                                                                                                                                    <  2:347747/66‑1 (MQ=255)                                                                                                  cggcggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTgg                                                                                                                                    >  1:347747/1‑66 (MQ=255)                                                                                                      ggTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGt                                             >  7:38191/1‑148 (MQ=255)                                                                                                          cTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAAc                                         <  8:262741/148‑1 (MQ=255)                                                                                                             gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtcctacaagagcgcggcccaaaaagccgcatctcgtgacat                                         <  5:3688‑M2/146‑109 (MQ=255)                                                                                                             gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgagag                                                                            >  8:42696/1‑110 (MQ=255)                                                                                                             gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTgagag                                                                            <  7:42696/110‑1 (MQ=255)                                                                                                             gATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGc                                     >  2:306011/1‑149 (MQ=255)                                                                                                                ggTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTc                                   <  1:306011/148‑1 (MQ=255)                                                                                                                 gTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTcc                                  <  1:162909/148‑1 (MQ=255)                                                                                                                  ttttCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcatgaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtccta                                                                             <  1:264271‑M2/105‑73 (MQ=255)                                                                                                                  ttttCTGCAAGGGGGATGACGAAATCGGCACAGttgcagaaaaccatcaagaaccgccgccctgatcggtccactctatgccccacgcaagccgcccaagtccta                                                                             >  2:264271‑M2/1‑33 (MQ=255)                                                                                                                          aaGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACg                        >  2:161250/1‑149 (MQ=255)                                                                                                                             ggggATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGgcg                     <  7:93933/149‑1 (MQ=255)                                                                                                                                 aTGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAg                  >  8:313853/1‑148 (MQ=255)                                                                                                                                            ggCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCt      <  8:38191/149‑1 (MQ=255)                                                                                                                                             gCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCtg     >  7:61529/1‑149 (MQ=255)                                                                                                                                              cacaGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCtgt    <  4:137941/149‑1 (MQ=255)                                                                                                                                                caGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTgg  <  8:61529/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GGATAGGCAGGTCTGATGTCACGAGATGCGGCTTTTTGGGCCGCGCTCTTGTAGGACTTGGGCGGCTTGCGTGGGGCATAGAGTGGACCGATCAGGGCGGCGGTTCTTGATGGTTTTCTGCAAGGGGGATGACGAAATCGGCACAGTTGCAGAAAAACAGTGGTAAGCCGCAAAGCGTGGGGATAGGCT‑CAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGG  >  NC_002947/1439694‑1439985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.