| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1720832 = | 49 (0.880) | 4 (0.080) | 4/246 | NT | 8.6% | coding (572/1101 nt) | PP_1516 | RND membrane fusion protein |
| ? | NC_002947 | 1720890 = | 38 (0.710) | coding (630/1101 nt) | PP_1516 | RND membrane fusion protein | |||||
GGCAGGCCGATGGCCACTTCTCGCTCGCCATCGGCGGCAAGGGTGAACACGGTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720889‑1720832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTT > NC_002947/1720890‑1721036 GGCAGGCCGATGGCCACTTCTCGCTCGCCATCGGCGGCAAGGGTGAACACGGTCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGT < 1:244878/111‑1GGCAGGCCGATGGCCACTTCTCGCTCGCCATCGGCGGCAAGGGTGAACACGGTCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGT > 2:244878/1‑111 GCAGGCCGATGGCCACTTCTCGCTCGCCATCGGCGGCAAGGGTGAACACGGTCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGC > 1:355125/1‑148 ACACGGTCTGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGC < 2:355125/149‑1 TGCCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCC > 7:42369/1‑149 CCGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTT < 1:21506/149‑1 GGCAGGCCGATGGCCACTTCTCGCTCGCCATCGGCGGCAAGGGTGAACACGGTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1720889‑1720832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGGAGCAGCAGTTCGCCCGCTTCGCTGTGGGCCAACCGGTGAGCGTGGAGCTGTGGTCGCACCCGCAGGCGCGTTTCCAGGGGCGCATTCGCGAGCTGTCACCGGCCGCCGACCCGCGCTCGCGCACGTTCGCGGCGCGCATCGCCTT > NC_002947/1720890‑1721036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |